Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr7g088550.1 |
Family | GH28 |
Protein Properties | Length: 477 Molecular Weight: 52177.9 Isoelectric Point: 7.888 |
Chromosome | Chromosome/Scaffold: 7 Start: 27306826 End: 27309223 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 80 | 432 | 0 |
ANDGGAQLIVPPGKWLTGSFNLTSHFTLFLQKGAVILGSQDESQWPQLPPLPSYGRGRDAPGPRFSSLIFGTHLTDVIITGNNGTIDGQGSYWWDKFHNK QLKITRPYMIEILYSDQIQISNLTLINSPSWFVHPTYSSNIIIKGLTILAPVDSPNTDGIDPDSSTNVRIEDNYIVSGDDCIAIKSGWDQYGIKFGKPSK QIIIRRLTCISPDSAMIALGSEMSGGIENVRVEDVTAINTESAVRIKSAVGRGGYVKDIFVKGVKLNTILRYVFWLTGSYGDHPDNGFDPKALPKITGII FRDVIAKNVTVAGQLEGISNDPFTGICISNVTIELSELKKKKKLPWNCTDVSG |
Full Sequence |
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Protein Sequence Length: 477 Download |
MVFSQKEIKS PRWTLIEINV ICVISIVLIF GSLAECNLDY LAINCRKHSA VLTDFGGVGD 60 GKTSNTKAFN TAITKLSQYA NDGGAQLIVP PGKWLTGSFN LTSHFTLFLQ KGAVILGSQD 120 ESQWPQLPPL PSYGRGRDAP GPRFSSLIFG THLTDVIITG NNGTIDGQGS YWWDKFHNKQ 180 LKITRPYMIE ILYSDQIQIS NLTLINSPSW FVHPTYSSNI IIKGLTILAP VDSPNTDGID 240 PDSSTNVRIE DNYIVSGDDC IAIKSGWDQY GIKFGKPSKQ IIIRRLTCIS PDSAMIALGS 300 EMSGGIENVR VEDVTAINTE SAVRIKSAVG RGGYVKDIFV KGVKLNTILR YVFWLTGSYG 360 DHPDNGFDPK ALPKITGIIF RDVIAKNVTV AGQLEGISND PFTGICISNV TIELSELKKK 420 KKLPWNCTDV SGVTSNVVPK PCDLLSEKKI ECPFPTDKLA IEDVQFKTCN IKSSVF* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 3.0e-21 | 55 | 345 | 307 | + polygalacturonase | ||
PLN02218 | PLN02218 | 4.0e-23 | 52 | 413 | 377 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 8.0e-30 | 148 | 442 | 311 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 4.0e-31 | 37 | 475 | 458 | + Probable polygalacturonase At3g15720 | ||
COG5434 | PGU1 | 3.0e-55 | 50 | 345 | 319 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD32865.1 | 0 | 8 | 476 | 1 | 467 | Glycoside hydrolase, family 28 [Medicago truncatula] |
GenBank | ACU17976.1 | 0 | 20 | 476 | 12 | 476 | unknown [Glycine max] |
RefSeq | XP_002278930.1 | 0 | 38 | 470 | 41 | 474 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002327490.1 | 0 | 23 | 473 | 1 | 452 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002513653.1 | 0 | 23 | 473 | 15 | 473 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 9.94922e-44 | 52 | 413 | 30 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 9.94922e-44 | 52 | 413 | 30 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 9.94922e-44 | 52 | 413 | 30 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 9.94922e-44 | 52 | 413 | 30 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 7e-17 | 94 | 386 | 52 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |