| Basic Information | |
|---|---|
| Species | Medicago truncatula |
| Cazyme ID | Medtr7g092470.1 |
| Family | GH28 |
| Protein Properties | Length: 483 Molecular Weight: 54012.1 Isoelectric Point: 6.724 |
| Chromosome | Chromosome/Scaffold: 7 Start: 29364575 End: 29370268 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 86 | 401 | 0 |
| SPGNYLTATIFLRSGVVLNVEPGATILGGPRQKDYPKESSRWYVVLAENATDVGIAGGGVVDGQAEKFVVRYNERKNVMVSWNQTGDCLGDECRPRLIGF LGCKNVKVFNVTLNQPAYWCLHLVRSENITIQDIAIYGDLNIPNNDGIDIEDSNNTVITRCHIDTGDDAICPKSSTGPVHNLTVTNSWIRSKSSAIKFGS ASWFEFKHFVFDNITIVDSHRGLAFQIRDGGNVSDIVFSNIKISTRYYDPLWWGRAEPIYVTTCPRDSTSKEASISNVHFINITANSENGIFLSGSKRGL LRNLSFINMNITYRRF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 483 Download |
| MYLCMLNSQS PEMEKPPLLF NFKIILLLLT QSLLTTSSHS LNPTTVTFSV TEYGAIGDGI 60 HYDTVSIQTA IDSCPYSIPC RITFPSPGNY LTATIFLRSG VVLNVEPGAT ILGGPRQKDY 120 PKESSRWYVV LAENATDVGI AGGGVVDGQA EKFVVRYNER KNVMVSWNQT GDCLGDECRP 180 RLIGFLGCKN VKVFNVTLNQ PAYWCLHLVR SENITIQDIA IYGDLNIPNN DGIDIEDSNN 240 TVITRCHIDT GDDAICPKSS TGPVHNLTVT NSWIRSKSSA IKFGSASWFE FKHFVFDNIT 300 IVDSHRGLAF QIRDGGNVSD IVFSNIKIST RYYDPLWWGR AEPIYVTTCP RDSTSKEASI 360 SNVHFINITA NSENGIFLSG SKRGLLRNLS FINMNITYRR FTSYAGGFFD YRPGCQELVK 420 HKTAGIMMEH IEGLEVRNVE MRWEKNDLEQ WNNPMEFKPS TVNNIHFSNF NSVVYSNSKS 480 SQ* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 7.0e-8 | 180 | 255 | 76 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 3.0e-8 | 179 | 265 | 87 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 8.0e-10 | 47 | 396 | 371 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-13 | 180 | 398 | 239 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 3.0e-43 | 48 | 329 | 318 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB41176.1 | 0 | 45 | 476 | 32 | 472 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_567055.1 | 0 | 45 | 476 | 32 | 472 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002282920.1 | 0 | 22 | 472 | 6 | 464 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002322693.1 | 0 | 42 | 475 | 7 | 442 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002462564.1 | 0 | 48 | 473 | 33 | 459 | hypothetical protein SORBIDRAFT_02g028280 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2uvf_B | 2e-17 | 36 | 290 | 147 | 449 | A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With Benzhydroxamic Acid |
| PDB | 2uvf_A | 2e-17 | 36 | 290 | 147 | 449 | A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With Benzhydroxamic Acid |
| PDB | 2uve_B | 2e-17 | 36 | 290 | 147 | 449 | A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase |
| PDB | 2uve_A | 2e-17 | 36 | 290 | 147 | 449 | A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase |
| PDB | 3jur_D | 2e-17 | 49 | 332 | 29 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
