Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr7g092780.1 |
Family | CE8 |
Protein Properties | Length: 390 Molecular Weight: 43105.4 Isoelectric Point: 7.2187 |
Chromosome | Chromosome/Scaffold: 7 Start: 29523407 End: 29525188 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 91 | 383 | 0 |
CVDRKGCCNFTTVQQAVNAVPDFSLKRNIIWINSGFYYEKVTVPKTKPNITFQGQSYTSTAIAWNDTAKSANGTFYSGSVQVFASNFIAKNISFMNLAPI PTPGAEGAQAVAMRISGDQAEFRGCGFFGAQDTLHDDKGRHYFKDCYIQGSIDFIFGNARSLYENCQLVSIANPVPPGQKNINGAVTAHGRVSMDENTGY VFLNSTIGGNGRIWLGRAWRPYSRVIFAFSIMSDIIAPEGWNDFNDPTRDQTIFYGEYNCSGPGANVNMRVPYVQRLNDTQAFPFLNTSFIDG |
Full Sequence |
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Protein Sequence Length: 390 Download |
MNLKSNNFLS LLVPIAAIFA SLHLINPNPQ FLTNFNYLNF TTLSPSSLYL GRDHHHRPHK 60 KHPDSGSDGS ICDDFPPGIP PPNTNTTSYL CVDRKGCCNF TTVQQAVNAV PDFSLKRNII 120 WINSGFYYEK VTVPKTKPNI TFQGQSYTST AIAWNDTAKS ANGTFYSGSV QVFASNFIAK 180 NISFMNLAPI PTPGAEGAQA VAMRISGDQA EFRGCGFFGA QDTLHDDKGR HYFKDCYIQG 240 SIDFIFGNAR SLYENCQLVS IANPVPPGQK NINGAVTAHG RVSMDENTGY VFLNSTIGGN 300 GRIWLGRAWR PYSRVIFAFS IMSDIIAPEG WNDFNDPTRD QTIFYGEYNC SGPGANVNMR 360 VPYVQRLNDT QAFPFLNTSF IDGDQWLET* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 2.0e-98 | 92 | 387 | 296 | + putative pectinesterase | ||
PLN02634 | PLN02634 | 1.0e-105 | 89 | 387 | 306 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 3.0e-108 | 92 | 387 | 297 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 2.0e-126 | 90 | 389 | 307 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 0 | 20 | 388 | 374 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABN08648.1 | 0 | 1 | 389 | 1 | 389 | Pectinesterase [Medicago truncatula] |
RefSeq | NP_172023.1 | 0 | 64 | 388 | 65 | 389 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002267842.1 | 0 | 1 | 388 | 1 | 394 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002323171.1 | 0 | 19 | 389 | 1 | 377 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002521065.1 | 0 | 63 | 389 | 67 | 393 | Pectinesterase-1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 90 | 388 | 9 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2.99878e-43 | 91 | 389 | 6 | 306 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 2e-19 | 99 | 358 | 43 | 338 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 4e-19 | 87 | 381 | 2 | 334 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 4e-19 | 87 | 381 | 2 | 334 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |