Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr7g110050.1 |
Family | GH28 |
Protein Properties | Length: 463 Molecular Weight: 50725.3 Isoelectric Point: 6.747 |
Chromosome | Chromosome/Scaffold: 7 Start: 35050035 End: 35052711 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 93 | 418 | 0 |
ACQNGSDVNVILVPQGFSFVIQSTIFTGPCQGDLIFKVDGTVLAPDGPESWPKNNSRRQWLVFYRMKGMSLEGSGSIDGRGQKWWDLPCKPHKGSNGTAL GTCDSPIAIRFFMSSNLTVKGLKVKNSPQFNFRFDACNNVHIESIYITAPKISPNTDGIHLEYANDVKIYNSVISNGDDCVSIGTGSYDVDIKNITCGPS HGISIGSLGNHNTKACVSNITVRDSIIKMSDNGIRIKTWQGGSGSVSGVTFNNIHMISVRNPIIIDQYYCLTKDCTNKTSAVSVSNILYTNIKGTYDIKS PPMHFACSDSVPCTNITLSEIELLPS |
Full Sequence |
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Protein Sequence Length: 463 Download |
MKHSYILPVA FCVVFLTLSL LVQARHHHSH KKHKHSHSHS HKSYETSPPQ PPPLHDDYYN 60 NNASGIFDVR SFGAIGDGIE DDTESFKMAW DTACQNGSDV NVILVPQGFS FVIQSTIFTG 120 PCQGDLIFKV DGTVLAPDGP ESWPKNNSRR QWLVFYRMKG MSLEGSGSID GRGQKWWDLP 180 CKPHKGSNGT ALGTCDSPIA IRFFMSSNLT VKGLKVKNSP QFNFRFDACN NVHIESIYIT 240 APKISPNTDG IHLEYANDVK IYNSVISNGD DCVSIGTGSY DVDIKNITCG PSHGISIGSL 300 GNHNTKACVS NITVRDSIIK MSDNGIRIKT WQGGSGSVSG VTFNNIHMIS VRNPIIIDQY 360 YCLTKDCTNK TSAVSVSNIL YTNIKGTYDI KSPPMHFACS DSVPCTNITL SEIELLPSQG 420 DIVHDPFCWN AYGDLETLTI PPVSCLLEGI PQSLLDYDIG HC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 7.0e-79 | 62 | 442 | 386 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 3.0e-81 | 64 | 446 | 389 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 3.0e-89 | 94 | 415 | 322 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-95 | 69 | 415 | 349 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-117 | 66 | 442 | 379 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37004.1 | 0 | 62 | 462 | 84 | 484 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002272733.1 | 0 | 62 | 462 | 65 | 456 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002302793.1 | 0 | 1 | 462 | 1 | 457 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002320271.1 | 0 | 62 | 462 | 38 | 438 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515219.1 | 0 | 56 | 462 | 131 | 537 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 3e-24 | 125 | 415 | 35 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-24 | 125 | 415 | 35 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-24 | 125 | 415 | 35 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 3e-24 | 125 | 415 | 35 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 3e-24 | 125 | 415 | 35 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |