Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr7g110710.1 |
Family | GH28 |
Protein Properties | Length: 467 Molecular Weight: 51624.2 Isoelectric Point: 5.0246 |
Chromosome | Chromosome/Scaffold: 7 Start: 35378086 End: 35381682 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 73 | 418 | 0 |
SDKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAIILGSTNSEDWPVVDPLPSYGRGRELPGGRHRSLIYGCNLTDVIITGNEGIIDGQGSIWWSMFRNK TLDYTRPHLVELMNSTRVLISNLTFLNSPFWTIHPVYCSQVTVQNVTILAPLDSPNTDGIDPDSSDDVCIEDCYISTGDDLIAIKSGWDEYGIAFGRPST NIVIHRLVGKTHTSAGIAIGSEMSGGVSDVRAEDIHFYDSYTAIRIKTSPGRGGYVRNIYVTNMTLANVDIAIRFTGSYGDHPDDAYDPNALPVIEKITI EDVIGENITKAGLIEGIEGDNFVNICLSNITLNVSSNYPWNCSNIR |
Full Sequence |
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Protein Sequence Length: 467 Download |
MRRPSTLVDV FLVLALFCCS SWKVWSSTLC KETNLDKVRP HSVSITEFGA VGDGITLNTK 60 AFQNAIFYLN SFSDKGGAKL FVPAGRWLTG SFDLISHLTL WLDKDAIILG STNSEDWPVV 120 DPLPSYGRGR ELPGGRHRSL IYGCNLTDVI ITGNEGIIDG QGSIWWSMFR NKTLDYTRPH 180 LVELMNSTRV LISNLTFLNS PFWTIHPVYC SQVTVQNVTI LAPLDSPNTD GIDPDSSDDV 240 CIEDCYISTG DDLIAIKSGW DEYGIAFGRP STNIVIHRLV GKTHTSAGIA IGSEMSGGVS 300 DVRAEDIHFY DSYTAIRIKT SPGRGGYVRN IYVTNMTLAN VDIAIRFTGS YGDHPDDAYD 360 PNALPVIEKI TIEDVIGENI TKAGLIEGIE GDNFVNICLS NITLNVSSNY PWNCSNIRGY 420 SDMVFPEACE PLKERIFPDH CSDCYYLSNH RQSSNNQNRG QKFHLT* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 2.0e-24 | 12 | 429 | 445 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 2.0e-29 | 40 | 411 | 381 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 7.0e-30 | 141 | 417 | 284 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 8.0e-33 | 41 | 426 | 405 | + Probable polygalacturonase At3g15720 | ||
COG5434 | PGU1 | 5.0e-65 | 43 | 341 | 323 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU18828.1 | 0 | 1 | 461 | 1 | 460 | unknown [Glycine max] |
EMBL | CBI37055.1 | 0 | 1 | 459 | 1 | 459 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273855.1 | 0 | 17 | 459 | 68 | 510 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301554.1 | 0 | 1 | 445 | 1 | 444 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002535132.1 | 0 | 17 | 460 | 27 | 470 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 2.94273e-44 | 41 | 404 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 2.94273e-44 | 41 | 404 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 2.94273e-44 | 41 | 404 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 2.94273e-44 | 41 | 404 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 2e-20 | 87 | 417 | 52 | 372 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |