Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr7g111600.1 |
Family | CBM43 |
Protein Properties | Length: 306 Molecular Weight: 30660.4 Isoelectric Point: 8.6491 |
Chromosome | Chromosome/Scaffold: 7 Start: 35822434 End: 35824891 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 160 | 241 | 1.4e-33 |
WCVAKPGTPQSTLQTALDYACGTKGTDCSQINQGGICYNPNSLQNHASFAFNSYYVKNPAATSCDFGGVATITNTNPSSGTC |
Full Sequence |
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Protein Sequence Length: 306 Download |
MANEASTCLL FLSFLIFFCS GTNAFSTFSG ARFLQKSKIS KSQIQFLVTN HKIGRKLQDT 60 NPAPTIITVP STNPVTTVSP TNPGATPVTV PSTTPPSVPL SPTNPANSPV PVTPITVPGG 120 TTPVNSYPPP SPLSGGTGTV PVTNPPPSST SPPSSSGGSW CVAKPGTPQS TLQTALDYAC 180 GTKGTDCSQI NQGGICYNPN SLQNHASFAF NSYYVKNPAA TSCDFGGVAT ITNTNPSSGT 240 CIFPSSSGGG AGAGASGGSS TTSSPVGFGP QSSPLDSSHS TGLRPLLSCM VVVTLLVGGR 300 LGMSP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 3.0e-19 | 160 | 230 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 3.0e-33 | 160 | 243 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK94231.1 | 1.99993e-41 | 9 | 243 | 7 | 230 | unknown [Populus trichocarpa] |
EMBL | CAN65737.1 | 0 | 61 | 242 | 235 | 421 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002276666.1 | 0 | 61 | 242 | 331 | 517 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002319461.1 | 0 | 54 | 304 | 321 | 614 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002512573.1 | 0 | 29 | 304 | 90 | 405 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 1e-19 | 151 | 247 | 4 | 100 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |