Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr7g113910.1 |
Family | GH28 |
Protein Properties | Length: 431 Molecular Weight: 47521.2 Isoelectric Point: 8.6731 |
Chromosome | Chromosome/Scaffold: 7 Start: 36911433 End: 36917106 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 83 | 394 | 0 |
ACSLSGFIVVVFPYGKTFLVHPIDIGGPCRSKITLRISGTIVAPQDPEVWNGLNKRGGGRIDGMGQEWWSRSCKINTTNPCHPAPTVSGASKYGAKSLTF HRCKSLKVRNLTVVNSQKMHIAFTRCMRVVVSRLNVSAPSSSPNTDGIHISATKGIEISHSDVKTGDDCISIVRNSSQVWIRNFSCGPGHGISIGTYLTN TKNGLRIKTWQGGHGLASNITFQDIVMENVSNPIIIDQYYCDSRLPCKNQTSAVQVVNISFINIIGTSASEETIKFACSDTYPCEGLHLENIYLPSYFGE NRRSYCWQAHGS |
Full Sequence |
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Protein Sequence Length: 431 Download |
MSSSIYVFVI FFIHITILVN PFLTYPPQTQ LQKLDSVIRL THSGSMIRTR TRFRRVLSIT 60 DFGAIGDGFQ DDTQAFLEVW KIACSLSGFI VVVFPYGKTF LVHPIDIGGP CRSKITLRIS 120 GTIVAPQDPE VWNGLNKRGG GRIDGMGQEW WSRSCKINTT NPCHPAPTVS GASKYGAKSL 180 TFHRCKSLKV RNLTVVNSQK MHIAFTRCMR VVVSRLNVSA PSSSPNTDGI HISATKGIEI 240 SHSDVKTGDD CISIVRNSSQ VWIRNFSCGP GHGISIGTYL TNTKNGLRIK TWQGGHGLAS 300 NITFQDIVME NVSNPIIIDQ YYCDSRLPCK NQTSAVQVVN ISFINIIGTS ASEETIKFAC 360 SDTYPCEGLH LENIYLPSYF GENRRSYCWQ AHGSTSSQGC VNPPACFSTS SDLIRQNVLL 420 ETNPDINYDL * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 9.0e-75 | 62 | 406 | 379 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 5.0e-76 | 56 | 408 | 383 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-81 | 84 | 374 | 319 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 8.0e-105 | 33 | 374 | 378 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 0 | 9 | 418 | 442 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD28401.1 | 0 | 28 | 427 | 29 | 449 | Glycoside hydrolase, family 28 [Medicago truncatula] |
GenBank | ABM67700.1 | 0 | 4 | 416 | 8 | 434 | polygalacturonase [Citrus sinensis] |
GenBank | ABN09018.1 | 0 | 146 | 430 | 1 | 267 | Pectolytic enzyme, Pectin lyase fold [Medicago truncatula] |
RefSeq | XP_002299601.1 | 0 | 31 | 418 | 27 | 439 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517603.1 | 0 | 34 | 422 | 12 | 420 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 7e-20 | 139 | 322 | 115 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1hg8_A | 0.000000000000007 | 86 | 369 | 23 | 324 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 2iq7_G | 0.000000000000008 | 135 | 355 | 72 | 298 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.000000000000008 | 135 | 355 | 72 | 298 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.000000000000008 | 135 | 355 | 72 | 298 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |