Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr8g005670.1 |
Family | GH5 |
Protein Properties | Length: 463 Molecular Weight: 52547.9 Isoelectric Point: 4.8491 |
Chromosome | Chromosome/Scaffold: 8 Start: 412920 End: 418271 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH5 | 74 | 408 | 1.7e-37 |
NDQPFYVNGFNTYWLMVFAADESTRGRVTQVFKHASSVGMTVCRTWAFNDGQWRALQKSPSLYDEVVFKALDFVVSEAKKYRIRLILSLVNNWEAYGGKA QYVKWGNAAGLNLTSDDDFFSHPTLRGYYKDHVKTVLNRVNTLTNITYKEDPTIFAWELMNEPRCTSDSLGDTLQEWIKEMAFYVKSIDPKHLLEIGLEG FYGPSTPQRFQFNPNSYAQQVGTDFIRNHQVLGVDFASAHIYPDSWISQSVADSHIPFVKSWMEAHIDDAEKYLGMPVVFGEFGVSAKDPGYNSTYRDTL INTVYKTILNSTKKGGSGAGSLLWQFFPDGTDYMD |
Full Sequence |
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Protein Sequence Length: 463 Download |
MPDVVLEITD QSPAADYMAT TQRQINSSTA FDDTEYEDWE SNIHIPNSIL TYGSEMEEAE 60 WQMVQKKGNQ FVVNDQPFYV NGFNTYWLMV FAADESTRGR VTQVFKHASS VGMTVCRTWA 120 FNDGQWRALQ KSPSLYDEVV FKALDFVVSE AKKYRIRLIL SLVNNWEAYG GKAQYVKWGN 180 AAGLNLTSDD DFFSHPTLRG YYKDHVKTVL NRVNTLTNIT YKEDPTIFAW ELMNEPRCTS 240 DSLGDTLQEW IKEMAFYVKS IDPKHLLEIG LEGFYGPSTP QRFQFNPNSY AQQVGTDFIR 300 NHQVLGVDFA SAHIYPDSWI SQSVADSHIP FVKSWMEAHI DDAEKYLGMP VVFGEFGVSA 360 KDPGYNSTYR DTLINTVYKT ILNSTKKGGS GAGSLLWQFF PDGTDYMDDG YAIVLSKAPS 420 TSSMISLQST RLALFNSLCS ERCHWGCKKK KVLQNVLYED EE* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00150 | Cellulase | 7.0e-5 | 135 | 377 | 247 | + Cellulase (glycosyl hydrolase family 5). | ||
COG2730 | BglC | 2.0e-6 | 117 | 415 | 320 | + Endoglucanase [Carbohydrate transport and metabolism] | ||
COG3934 | COG3934 | 9.0e-31 | 104 | 419 | 325 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU19893.1 | 0 | 56 | 461 | 56 | 461 | unknown [Glycine max] |
EMBL | CBI18019.1 | 0 | 24 | 461 | 24 | 470 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273389.1 | 0 | 61 | 461 | 9 | 409 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002323680.1 | 0 | 54 | 461 | 8 | 413 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002528703.1 | 0 | 57 | 461 | 67 | 472 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rh9_A | 0 | 63 | 433 | 6 | 370 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzq_A | 0 | 72 | 421 | 21 | 373 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzo_A | 0 | 72 | 421 | 21 | 373 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzn_A | 0 | 72 | 421 | 21 | 373 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzm_A | 0 | 72 | 421 | 21 | 373 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JK987915 | 298 | 54 | 351 | 0 |
DT747977 | 293 | 63 | 355 | 0 |
CV530822 | 288 | 27 | 311 | 0 |
GT140438 | 235 | 223 | 457 | 0 |
FK006634 | 269 | 148 | 416 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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