| Basic Information | |
|---|---|
| Species | Medicago truncatula |
| Cazyme ID | Medtr8g006500.1 |
| Family | GH28 |
| Protein Properties | Length: 196 Molecular Weight: 21246.9 Isoelectric Point: 8.3878 |
| Chromosome | Chromosome/Scaffold: 8 Start: 760391 End: 762308 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 14 | 189 | 0 |
| GADRKLWIKFENVTNLIVDGGGTINGNGRIWWENSCKVNESLPCKGAPTAVTFDECNNLKVDKIRFRNAQQMHLRIQGCNNVWASNLIVTAPGHSPNTDG IHITHSQNVFITNSDDCISIVSGSKNVRATDITCGPGHGISIGSLGGGNTQAEVSNVEVNRATLIGTTNGVRIKTW | |||
| Full Sequence |
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| Protein Sequence Length: 196 Download |
| MPTQYSWPRI SAYGADRKLW IKFENVTNLI VDGGGTINGN GRIWWENSCK VNESLPCKGA 60 PTAVTFDECN NLKVDKIRFR NAQQMHLRIQ GCNNVWASNL IVTAPGHSPN TDGIHITHSQ 120 NVFITNSDDC ISIVSGSKNV RATDITCGPG HGISIGSLGG GNTQAEVSNV EVNRATLIGT 180 TNGVRIKTWQ VNLWL* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN03003 | PLN03003 | 2.0e-34 | 8 | 190 | 189 | + Probable polygalacturonase At3g15720 |
| PLN02188 | PLN02188 | 7.0e-35 | 20 | 190 | 177 | + polygalacturonase/glycoside hydrolase family protein |
| pfam00295 | Glyco_hydro_28 | 8.0e-52 | 16 | 190 | 180 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
| PLN02793 | PLN02793 | 7.0e-56 | 14 | 190 | 182 | + Probable polygalacturonase |
| PLN02218 | PLN02218 | 2.0e-56 | 16 | 190 | 182 | + polygalacturonase ADPG |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC26512.1 | 0 | 8 | 190 | 156 | 343 | polygalacturonase precursor [Cucumis melo] |
| GenBank | AAF21207.1 | 0 | 6 | 190 | 138 | 326 | AC013483_31 putative polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_187454.2 | 0 | 6 | 190 | 139 | 327 | QRT2 (QUARTET 2); polygalacturonase [Arabidopsis thaliana] |
| RefSeq | XP_002313308.1 | 0 | 9 | 190 | 79 | 265 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002517823.1 | 0 | 9 | 190 | 150 | 336 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 0.000000000001 | 21 | 188 | 63 | 233 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.000000000001 | 21 | 188 | 63 | 233 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.000000000001 | 21 | 188 | 63 | 233 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.000000000001 | 21 | 188 | 63 | 233 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 0.000000000001 | 21 | 188 | 63 | 233 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DT029367 | 185 | 11 | 190 | 0 |
| DT026903 | 185 | 11 | 190 | 0 |
| DT029252 | 185 | 11 | 190 | 0 |
| DT030040 | 185 | 11 | 190 | 0 |
| DT028750 | 185 | 11 | 190 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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