Basic Information | |
---|---|
Species | Medicago truncatula |
Cazyme ID | Medtr8g008700.1 |
Family | GH28 |
Protein Properties | Length: 372 Molecular Weight: 39602.5 Isoelectric Point: 7.8359 |
Chromosome | Chromosome/Scaffold: 8 Start: 1051149 End: 1055706 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 54 | 354 | 0 |
FNSACKATGMSTLVIPAGKTFMVSKVIFSGRCNAKVRIQLEGQIVAPSKANSKAQSYWFTIEYVNGLTIDGNGQGGLDGDGSTWWESGGERPGVQALLFH SCNDLSVSNLRITNSPSSHVSINMCNRTTFSHVSINSPATSPNTDGFDISFSTDIRIENSNIKSGDDCIAVNGGSNFINVTGVTCGPGHGISVGSLGKKR TNDQVSDVHVRNCTFKETQNGARIKTVPGGSGYARHITYDQIILVNVKNSIIIDQYYNDIIPQAGDVSVSDVTYRGFTGTSANDLAIQLNCGTKTYSQCK N |
Full Sequence |
---|
Protein Sequence Length: 372 Download |
MQGFLTFILI LSFILPCLCT RLNVGTTNAI YNVMQYGAHG DGKTDDSQAF INAFNSACKA 60 TGMSTLVIPA GKTFMVSKVI FSGRCNAKVR IQLEGQIVAP SKANSKAQSY WFTIEYVNGL 120 TIDGNGQGGL DGDGSTWWES GGERPGVQAL LFHSCNDLSV SNLRITNSPS SHVSINMCNR 180 TTFSHVSINS PATSPNTDGF DISFSTDIRI ENSNIKSGDD CIAVNGGSNF INVTGVTCGP 240 GHGISVGSLG KKRTNDQVSD VHVRNCTFKE TQNGARIKTV PGGSGYARHI TYDQIILVNV 300 KNSIIIDQYY NDIIPQAGDV SVSDVTYRGF TGTSANDLAI QLNCGTKTYS QCKNAHGTAT 360 NTIPSVTCLV K* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 1.0e-68 | 58 | 359 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-75 | 27 | 347 | 332 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-78 | 30 | 354 | 339 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 8.0e-89 | 22 | 369 | 384 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 1.0e-93 | 30 | 354 | 335 | + polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 1 | 369 | 1 | 396 | PGN [Glycine max] |
EMBL | CBI36307.1 | 0 | 1 | 369 | 1 | 402 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002266543.1 | 0 | 32 | 369 | 21 | 374 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324855.1 | 0 | 9 | 369 | 4 | 394 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 1 | 369 | 1 | 392 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 2e-29 | 46 | 352 | 7 | 304 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 2e-29 | 46 | 352 | 7 | 304 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 2e-29 | 46 | 352 | 7 | 304 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 2e-29 | 46 | 352 | 7 | 304 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 2e-29 | 46 | 352 | 7 | 304 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |