Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr8g068110.1 |
Family | PL4 |
Protein Properties | Length: 685 Molecular Weight: 78151.1 Isoelectric Point: 6.6576 |
Chromosome | Chromosome/Scaffold: 8 Start: 17479661 End: 17487073 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 58 | 664 | 0 |
TEDNQQLVIDNGIVSVTLSRPEGHVIAISYNGIDNILESENDEDDRGYFDVVWNEVGKPSTFQRIEGTNFSVIAADENMVEVSFLRSWTSSMSGKDVPIN IDKRYIFRSGDSGFYSYAIFDRPEGMPAVEVDQIRYVFKLNQHRFKYMALSNTRQRSMPTMRDRDTGQVLAYKEAVLLTKPINPQFRGEVDDKYQYSCEN TDNTVHGWINFDSDEPVGFWMITPSNEFRNGGPIKQDLTSHVGPITLSMFVSTHYAGKEVTMAFEEGETYKKVFGPVFVYLNTDSSKNDNTTLWSDAVQQ LSKEVKSWPYDFPKSQDYFPPNQRGAVFGRLLVQDWYLQGGKFQGTNAYVGLALPGDAGSWQRESKGYQFWTRSDAKGYFKINNIVPGDYNLYGWVPGFI GDYKYNGTITITPGGVINLNYLVYNPPRNGPTIWEIGIPNRLASEFHVPDPYPTLMNKLYTAQRRDKFRQYGLWERYTDMYPNDDLIYTVGVNKYRDWFY AHVTRSKGNKTYEPTTWQIIFEHEQDIISGNYTLQLALASAADADLQVRFNDPSIYPPHFATGLIGGDNAIARHGIHGLHWLFSIDVPSDLLVKGKNIVY LRQSKAL |
Full Sequence |
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Protein Sequence Length: 685 Download |
MKMKMLSKKN NNVIFFWWLG MIMKFCFLLC ACSENTSLSG GSKKINSFGS TSIVKLNTED 60 NQQLVIDNGI VSVTLSRPEG HVIAISYNGI DNILESENDE DDRGYFDVVW NEVGKPSTFQ 120 RIEGTNFSVI AADENMVEVS FLRSWTSSMS GKDVPINIDK RYIFRSGDSG FYSYAIFDRP 180 EGMPAVEVDQ IRYVFKLNQH RFKYMALSNT RQRSMPTMRD RDTGQVLAYK EAVLLTKPIN 240 PQFRGEVDDK YQYSCENTDN TVHGWINFDS DEPVGFWMIT PSNEFRNGGP IKQDLTSHVG 300 PITLSMFVST HYAGKEVTMA FEEGETYKKV FGPVFVYLNT DSSKNDNTTL WSDAVQQLSK 360 EVKSWPYDFP KSQDYFPPNQ RGAVFGRLLV QDWYLQGGKF QGTNAYVGLA LPGDAGSWQR 420 ESKGYQFWTR SDAKGYFKIN NIVPGDYNLY GWVPGFIGDY KYNGTITITP GGVINLNYLV 480 YNPPRNGPTI WEIGIPNRLA SEFHVPDPYP TLMNKLYTAQ RRDKFRQYGL WERYTDMYPN 540 DDLIYTVGVN KYRDWFYAHV TRSKGNKTYE PTTWQIIFEH EQDIISGNYT LQLALASAAD 600 ADLQVRFNDP SIYPPHFATG LIGGDNAIAR HGIHGLHWLF SIDVPSDLLV KGKNIVYLRQ 660 SKALSPFQGV MYDYIRLERP SSKT* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13620 | CarboxypepD_reg | 0.005 | 419 | 477 | 59 | + Carboxypeptidase regulatory-like domain. | ||
cd10316 | RGL4_M | 5.0e-30 | 380 | 477 | 98 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 7.0e-36 | 491 | 678 | 191 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 3.0e-72 | 57 | 346 | 296 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 6.0e-77 | 60 | 247 | 190 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAS99719.1 | 0 | 54 | 680 | 52 | 674 | At2g22620 [Arabidopsis thaliana] |
RefSeq | NP_179847.1 | 0 | 54 | 680 | 52 | 674 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002308510.1 | 0 | 22 | 680 | 18 | 671 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527229.1 | 0 | 23 | 684 | 18 | 671 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527245.1 | 0 | 64 | 681 | 2 | 619 | lyase, putative [Ricinus communis] |