| Basic Information | |
|---|---|
| Species | Medicago truncatula |
| Cazyme ID | Medtr8g068160.1 |
| Family | PL4 |
| Protein Properties | Length: 689 Molecular Weight: 78743.5 Isoelectric Point: 9.3103 |
| Chromosome | Chromosome/Scaffold: 8 Start: 17508184 End: 17514814 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL4 | 68 | 670 | 0 |
| LVVDNGIVSVTLSKPEGYLIGISYNGIDNILESEYKEHARGYFDVVWNELGKHGKVQRIHGTKFSVIVANENMVEVSFLRSWTSSMTGIDVPINIDIRYI FRRGDSGFYSYAIFDRHEGMPAVKVDQIRFVFRLNKDRFNYMALSDTRQRRMPTMRDVKTGQVLAYPEAVLLTKPHNPQFTGEVDDKYQYSCENINNTVH GWISLDSDPTVGFWMITPSNEFRNGGPIKQDLTSHAGPITLSMFVSPHYAGKDVTMEFEEGETYKKVFGPIFVYLNTASSENDNATLWSDAVQQFSKEVQ SWPYDFPQSKDYFPPNQRGAVFGRLLVQDWYFKGGRFQYTNNAYVGLALPGDAGSWQTESKGYQFWTRANAKGYFKITNAVPGDYNLYAWVPGFIGDYKY NATITITPGGVIKLNSLVYNPPRNGPTIWEIGIPDRLASEFHIPDPYPTLMNKLYTKKHSDKFRQYGLWKRYSDIYPNDDLVYTVGVNNYRDWFFAHVTR STGNKTYEPTTWQIIFEHKNDIISGNYTLQLALASAADSNLQVRFNDRSKDPPHFATGRIGRDNAIARHGIHGLYRLFSINVSSNLLVKGKNIIYLRQSK ADT | |||
| Full Sequence |
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| Protein Sequence Length: 689 Download |
| MMKMNVLSMK NNNVIFFWWF GMIVKFCFLL CACSQNTSLR GGLKKINNLG STVVVKLNTE 60 NKQQVILLVV DNGIVSVTLS KPEGYLIGIS YNGIDNILES EYKEHARGYF DVVWNELGKH 120 GKVQRIHGTK FSVIVANENM VEVSFLRSWT SSMTGIDVPI NIDIRYIFRR GDSGFYSYAI 180 FDRHEGMPAV KVDQIRFVFR LNKDRFNYMA LSDTRQRRMP TMRDVKTGQV LAYPEAVLLT 240 KPHNPQFTGE VDDKYQYSCE NINNTVHGWI SLDSDPTVGF WMITPSNEFR NGGPIKQDLT 300 SHAGPITLSM FVSPHYAGKD VTMEFEEGET YKKVFGPIFV YLNTASSEND NATLWSDAVQ 360 QFSKEVQSWP YDFPQSKDYF PPNQRGAVFG RLLVQDWYFK GGRFQYTNNA YVGLALPGDA 420 GSWQTESKGY QFWTRANAKG YFKITNAVPG DYNLYAWVPG FIGDYKYNAT ITITPGGVIK 480 LNSLVYNPPR NGPTIWEIGI PDRLASEFHI PDPYPTLMNK LYTKKHSDKF RQYGLWKRYS 540 DIYPNDDLVY TVGVNNYRDW FFAHVTRSTG NKTYEPTTWQ IIFEHKNDII SGNYTLQLAL 600 ASAADSNLQV RFNDRSKDPP HFATGRIGRD NAIARHGIHG LYRLFSINVS SNLLVKGKNI 660 IYLRQSKADT PFQGVMYDYI RLERPPAI* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10316 | RGL4_M | 5.0e-30 | 384 | 484 | 101 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 2.0e-45 | 496 | 683 | 191 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 6.0e-71 | 68 | 350 | 289 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 3.0e-73 | 69 | 251 | 185 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAS99719.1 | 0 | 68 | 685 | 62 | 674 | At2g22620 [Arabidopsis thaliana] |
| RefSeq | NP_179847.1 | 0 | 68 | 685 | 62 | 674 | lyase [Arabidopsis thaliana] |
| RefSeq | XP_002308510.1 | 0 | 23 | 685 | 18 | 671 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002319997.1 | 0 | 68 | 686 | 1 | 618 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527245.1 | 0 | 67 | 685 | 1 | 618 | lyase, putative [Ricinus communis] |
