| Basic Information | |
|---|---|
| Species | Medicago truncatula |
| Cazyme ID | Medtr8g078280.1 |
| Family | PL1 |
| Protein Properties | Length: 393 Molecular Weight: 44389 Isoelectric Point: 9.5217 |
| Chromosome | Chromosome/Scaffold: 8 Start: 21871410 End: 21873222 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 113 | 311 | 0 |
| ITLKRNMNIKLVRPLLISSFTTIDGRGVDVHIADNACLMIYKATNIIIHRIRVHHCRPQAPGMMMGPDGKIISLGQVDGGAIRLVSASEIWIDHNTLYNC QDGLLDVTRGSTDITISNNWFREQNKVMLLGHDDEFVRDKNMKVTVVYNYFGPNCHQRMPRIRHGYAHVANNLYMGWVQYAIGGSMESSLKSQSNLFIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 393 Download |
| MVCHQVINSV FWCFILLVVM LTFFTTNASS TEKTKIEDKE MNVIDQCWRF NPKWRKHRQQ 60 LTVCSVGYVG KMTNNIGKDL IHYTVTDPRD HPLNPAPGTL RYEASRIQGK VWITLKRNMN 120 IKLVRPLLIS SFTTIDGRGV DVHIADNACL MIYKATNIII HRIRVHHCRP QAPGMMMGPD 180 GKIISLGQVD GGAIRLVSAS EIWIDHNTLY NCQDGLLDVT RGSTDITISN NWFREQNKVM 240 LLGHDDEFVR DKNMKVTVVY NYFGPNCHQR MPRIRHGYAH VANNLYMGWV QYAIGGSMES 300 SLKSQSNLFI AHATGKKEVT WRKSSNGIGD TWKFYSVGDA FENGASFVET KGGQVTKPNY 360 SHEQNFKVVD AKYVRSLTSS SGVLQCSKTS IC* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 5.0e-22 | 198 | 309 | 123 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 1.0e-42 | 131 | 309 | 187 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 2.0e-53 | 118 | 311 | 205 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 72 | 392 | 1 | 320 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002267384.1 | 0 | 41 | 392 | 19 | 369 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0 | 41 | 392 | 1 | 354 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 41 | 392 | 1 | 352 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 11 | 319 | 6 | 307 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 42 | 384 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 42 | 384 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 8e-16 | 108 | 314 | 45 | 251 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.00000000000001 | 127 | 309 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3vmw_A | 0.0000000000007 | 146 | 383 | 93 | 322 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
