| Basic Information | |
|---|---|
| Species | Medicago truncatula |
| Cazyme ID | Medtr8g078390.1 |
| Family | PL1 |
| Protein Properties | Length: 393 Molecular Weight: 44191.7 Isoelectric Point: 8.7975 |
| Chromosome | Chromosome/Scaffold: 8 Start: 21900502 End: 21902273 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 112 | 311 | 0 |
| WITFQKDMNIKLVRPLLISSFTTIDGRGVDVHIVDNACLMIYKATNIIIHGIRVHHCRPQAPGMVMGPDGNIMPLGQVDGDAIRLVSASKIWIDHSTLSD CQDGLLDVTRGSTNITISNNWFREQNKVMLLGHDDGFVRDKNMKVTVVYNYFGPNCHQRMPRIRHGYAHVVNNLYMGWVQYAIGGSMEPSLKSQSNLFIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 393 Download |
| MVCHRVINSV FWCFIFLVVL VTFFTTKVSS SKQSEIEGME MNVIDQCWRF NPEWRKYRQQ 60 LALCSVGYAG KMTNNIGKDL IHYKVTDHSD DPLNPRPGTL RYGASKIQGK VWITFQKDMN 120 IKLVRPLLIS SFTTIDGRGV DVHIVDNACL MIYKATNIII HGIRVHHCRP QAPGMVMGPD 180 GNIMPLGQVD GDAIRLVSAS KIWIDHSTLS DCQDGLLDVT RGSTNITISN NWFREQNKVM 240 LLGHDDGFVR DKNMKVTVVY NYFGPNCHQR MPRIRHGYAH VVNNLYMGWV QYAIGGSMEP 300 SLKSQSNLFI APTVGKKEVT WRKSSNEVGD TWEFYSVGDA FENGASFMET KGGQVTKPNY 360 NPEQNFEVAD AKSVRSLTRS SGVLQCSKTS IC* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 2.0e-25 | 129 | 309 | 193 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 4.0e-54 | 131 | 309 | 187 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 8.0e-66 | 118 | 312 | 206 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 72 | 392 | 1 | 320 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002267384.1 | 0 | 41 | 392 | 19 | 369 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0 | 41 | 392 | 1 | 354 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 41 | 392 | 1 | 352 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 11 | 319 | 6 | 307 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 42 | 384 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 42 | 384 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 3e-16 | 108 | 300 | 45 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pcl_A | 0.000000000000007 | 109 | 309 | 61 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| PDB | 1vbl_A | 0.000000000000008 | 127 | 309 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
