Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr8g102380.1 |
Family | CE8 |
Protein Properties | Length: 382 Molecular Weight: 41932.2 Isoelectric Point: 9.576 |
Chromosome | Chromosome/Scaffold: 8 Start: 29816483 End: 29819051 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 83 | 372 | 0 |
KHSSKGGFSSIQAAIDSLPFINLVRVVIKVHAGVYTEKVSIPALKSFITIQGAGADKTIVQWGDTALTPNPGAKGQTLGTYGSATFAVNSPYFIAKNITF KNTAPIPKPGAVGKQGVALRISADTAMFLGCKFLGAQDTLYDHIGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQNIGALTAQGRNSLLEDTGFSF VHCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGPGASYAGRVAWSRELTDEEAKPFISLNYVD |
Full Sequence |
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Protein Sequence Length: 382 Download |
MNFIFYVLLL LLVLQNPIVT QCHTKGLRPK PSTGFGMSAN MTKVQESEQQ FMKWVKFVGG 60 LKHTVFRTAK NKLFPSYTLN VYKHSSKGGF SSIQAAIDSL PFINLVRVVI KVHAGVYTEK 120 VSIPALKSFI TIQGAGADKT IVQWGDTALT PNPGAKGQTL GTYGSATFAV NSPYFIAKNI 180 TFKNTAPIPK PGAVGKQGVA LRISADTAMF LGCKFLGAQD TLYDHIGRHY YKDCYIEGSV 240 DFIFGNALSL FEGCHVHAIA QNIGALTAQG RNSLLEDTGF SFVHCKVTGS GALYLGRAWG 300 PFSRVVFAYT YMDNIIIPKG WYNWGDPNRE MTVFYGQYKC TGPGASYAGR VAWSRELTDE 360 EAKPFISLNY VDGSEWINSF F* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 1.0e-114 | 85 | 377 | 293 | + putative pectinesterase | ||
PLN02304 | PLN02304 | 5.0e-115 | 90 | 380 | 299 | + probable pectinesterase | ||
PLN02634 | PLN02634 | 2.0e-116 | 38 | 377 | 341 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 3.0e-120 | 88 | 377 | 292 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 0 | 27 | 377 | 353 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN63186.1 | 0 | 8 | 377 | 10 | 377 | hypothetical protein [Vitis vinifera] |
EMBL | CBI27989.1 | 0 | 65 | 377 | 1 | 311 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_197474.1 | 0 | 20 | 377 | 26 | 381 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002330522.1 | 0 | 6 | 377 | 10 | 379 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002514210.1 | 0 | 8 | 378 | 12 | 382 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 81 | 379 | 10 | 310 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2.00386e-43 | 81 | 379 | 6 | 306 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 2e-27 | 90 | 365 | 44 | 352 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 3e-18 | 76 | 365 | 3 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 3e-18 | 76 | 365 | 3 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |