| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00000088m |
| Family | GH33 |
| Protein Properties | Length: 363 Molecular Weight: 40470.5 Isoelectric Point: 8.4654 |
| Chromosome | Chromosome/Scaffold: 039939 Start: 3468 End: 5263 |
| Description | BNR/Asp-box repeat family protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH33 | 93 | 350 | 3.7e-21 |
| KTFPAGSAPFNSCHASTIVQIEEGNFLVAYFGGSMEGAPDVKIWLQRYIDGFWHPPVVADEQDGVPMWNPVLFQLPSRELLLFYKIGQEVQKWSGAMKRS LDGGITWLPREQLPPGILGPIKNKPFLLEDGRLLCGSSVESWNSWGAWLEVTRDAGRTWRKYGPIYVDGQPLGVIQPVPYRTAKGVILVLLRSFPTIGRI CMADSFDGGVTWSFVQGTQLPNPNSGIDGAKMKDGRVVLAYNTFSRGTLKLAVSLNDG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 363 Download |
| MLIHGTNKLQ LLWNVISCIL LFNTFFNFDS PQNIHLGKKT FDFTILASRL LHETRTNSRH 60 VQEMVDNGHR FAEITQNITN ITANVTSGWS ILKTFPAGSA PFNSCHASTI VQIEEGNFLV 120 AYFGGSMEGA PDVKIWLQRY IDGFWHPPVV ADEQDGVPMW NPVLFQLPSR ELLLFYKIGQ 180 EVQKWSGAMK RSLDGGITWL PREQLPPGIL GPIKNKPFLL EDGRLLCGSS VESWNSWGAW 240 LEVTRDAGRT WRKYGPIYVD GQPLGVIQPV PYRTAKGVIL VLLRSFPTIG RICMADSFDG 300 GVTWSFVQGT QLPNPNSGID GAKMKDGRVV LAYNTFSRGT LKLAVSLNDG CRYPVPEILT 360 STA |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| COG4692 | COG4692 | 5.0e-8 | 43 | 335 | 306 | + Predicted neuraminidase (sialidase) [Carbohydrate transport and metabolism] |
| COG4692 | COG4692 | 6.0e-17 | 101 | 354 | 301 | + Predicted neuraminidase (sialidase) [Carbohydrate transport and metabolism] |
| pfam13088 | BNR_2 | 3.0e-73 | 116 | 350 | 250 | + BNR repeat-like domain. This family of proteins contains BNR-like repeats suggesting these proteins may act as sialidases. |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC82140.1 | 0 | 3 | 350 | 4 | 370 | hypothetical protein OsI_26191 [Oryza sativa Indica Group] |
| GenBank | EEC82140.1 | 0 | 112 | 353 | 421 | 636 | hypothetical protein OsI_26191 [Oryza sativa Indica Group] |
| RefSeq | NP_001059779.1 | 0 | 3 | 350 | 4 | 370 | Os07g0516000 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001159249.1 | 0 | 8 | 350 | 2 | 343 | hypothetical protein LOC100304339 [Zea mays] |
| RefSeq | XP_002460769.1 | 0 | 1 | 350 | 1 | 358 | hypothetical protein SORBIDRAFT_02g034675 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jkb_A | 0.005 | 188 | 335 | 449 | 601 | A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In Complex With 2,7-Anhydro-Neu5ac |
| PDB | 4fq4_A | 0.005 | 188 | 335 | 460 | 612 | A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In Complex With 2,7-Anhydro-Neu5ac |
| PDB | 4fpy_A | 0.005 | 188 | 335 | 460 | 612 | A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In Complex With 2,7-Anhydro-Neu5ac |
| PDB | 4fpo_B | 0.005 | 188 | 335 | 460 | 612 | A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In Complex With 2,7-Anhydro-Neu5ac |
| PDB | 4fpl_A | 0.005 | 188 | 335 | 460 | 612 | A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In Complex With 2,7-Anhydro-Neu5ac |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FF595784 | 234 | 97 | 330 | 0 |
| FF344386 | 223 | 128 | 350 | 0 |
| EL689016 | 254 | 97 | 350 | 0 |
| EY114510 | 252 | 94 | 345 | 0 |
| JG813383 | 249 | 101 | 349 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
| Phylogeny |
|---|
 |