y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00000152m |
Family | CBM49 |
Protein Properties | Length: 641 Molecular Weight: 68479.4 Isoelectric Point: 7.2939 |
Chromosome | Chromosome/Scaffold: 039946 Start: 792 End: 3653 |
Description | glycosyl hydrolase 9C3 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM49 | 548 | 625 | 7.1e-37 |
IEIEQNATASWTERGKTYHRYAVTVTNRSPKTVHELHIGISRLYGKVWGVDKARYGYVLPSWLPALPAGKSAAFVYVQ | |||
GH9 | 37 | 502 | 0 |
DYGTALSKSILYFEAQRSGRLPGGQRVAWRANSGLLDGKANGVDLVGGYYDAGDNVKFGLPMAFTVTMMSWSVLEYGDQMAAAGELGHALEAVRWGTDYF VKAHPEADVLYAEVGDGDSDHDCWQRPEDMTTSRQAYRLDPQHPGSELAGETAAAMAAASLVFRTSDPGYANQLLQHSKQLFDFADKYRGRYDSSITVAR NYYASSSGYGDELLWAAAWLYQASGDRRYLDYLANNADALGGTGWSINQFGWDVKYPGVQVLASMVLLRGKAGGGAHADVLRRYKQKADLFACSCLGRAG ASNVRRTPGGMIYHQSWNNVQFVTSASFLLAAYGDHLAAARQAAQCPSGAAAQPAELLAFARSQVDYILGSNPRATSYMVGYGATYPQQAHHRGASIVSI KADPAFVSCQGGYSSWYHRRGSNPNLLVGATVGGPDEYDNFADERDNYEQTEATTYNNAPMMGVLA |
Full Sequence |
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Protein Sequence Length: 641 Download |
MAGGRGGGGS CGVAGSLTLL VLAAAAQVAC AAAAGHDYGT ALSKSILYFE AQRSGRLPGG 60 QRVAWRANSG LLDGKANGVD LVGGYYDAGD NVKFGLPMAF TVTMMSWSVL EYGDQMAAAG 120 ELGHALEAVR WGTDYFVKAH PEADVLYAEV GDGDSDHDCW QRPEDMTTSR QAYRLDPQHP 180 GSELAGETAA AMAAASLVFR TSDPGYANQL LQHSKQLFDF ADKYRGRYDS SITVARNYYA 240 SSSGYGDELL WAAAWLYQAS GDRRYLDYLA NNADALGGTG WSINQFGWDV KYPGVQVLAS 300 MVLLRGKAGG GAHADVLRRY KQKADLFACS CLGRAGASNV RRTPGGMIYH QSWNNVQFVT 360 SASFLLAAYG DHLAAARQAA QCPSGAAAQP AELLAFARSQ VDYILGSNPR ATSYMVGYGA 420 TYPQQAHHRG ASIVSIKADP AFVSCQGGYS SWYHRRGSNP NLLVGATVGG PDEYDNFADE 480 RDNYEQTEAT TYNNAPMMGV LARLAAGHAG GRRFGHSLAD EVSASSLKSD NQTSRPPPSL 540 AAEHASPIEI EQNATASWTE RGKTYHRYAV TVTNRSPKTV HELHIGISRL YGKVWGVDKA 600 RYGYVLPSWL PALPAGKSAA FVYVQAAPPA DVWVTGYKLL * 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00759 | Glyco_hydro_9 | 5.0e-178 | 37 | 500 | 466 | + Glycosyl hydrolase family 9. | ||
PLN02171 | PLN02171 | 0 | 36 | 640 | 606 | + endoglucanase | ||
PLN02340 | PLN02340 | 0 | 37 | 638 | 604 | + endoglucanase | ||
PLN02420 | PLN02420 | 0 | 37 | 500 | 465 | + endoglucanase | ||
PLN00119 | PLN00119 | 0 | 37 | 500 | 464 | + endoglucanase |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005576 | extracellular region |
GO:0005975 | carbohydrate metabolic process |
GO:0030246 | carbohydrate binding |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN25631.1 | 0 | 31 | 640 | 22 | 623 | unknown [Zea mays] |
GenBank | EAY73052.1 | 0 | 5 | 640 | 3 | 640 | hypothetical protein OsI_00928 [Oryza sativa Indica Group] |
RefSeq | NP_001042423.1 | 0 | 7 | 640 | 4 | 640 | Os01g0220100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001054920.1 | 0 | 8 | 640 | 5 | 629 | Os05g0212300 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002454930.1 | 0 | 30 | 640 | 38 | 654 | hypothetical protein SORBIDRAFT_03g001560 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ksd_A | 0 | 36 | 506 | 3 | 430 | D Chain D, Correction Of X-Ray Intensities From An Hslv-Hslu Co- Crystal Containing Lattice Translocation Defects |
PDB | 1ksc_A | 0 | 36 | 506 | 3 | 430 | D Chain D, Correction Of X-Ray Intensities From An Hslv-Hslu Co- Crystal Containing Lattice Translocation Defects |
PDB | 1ks8_A | 0 | 36 | 506 | 3 | 430 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
PDB | 2xfg_A | 0 | 32 | 504 | 20 | 459 | B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules |
PDB | 4tf4_B | 0 | 37 | 536 | 5 | 472 | B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules |