Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00000296m |
Family | GH28 |
Protein Properties | Length: 265 Molecular Weight: 28638.8 Isoelectric Point: 9.2028 |
Chromosome | Chromosome/Scaffold: 0395241 Start: 182 End: 1063 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 2 | 236 | 0 |
PTALTFSSCKNLRLENLKLRNSQQIHMSVEDCSHVKLAHLSITAPGTRPNTDGIHIARSRRVHVTDCTIKTGDDCISIEDGTENLHVKNILCGPGHGISI GSLGDHGSEAYVINVTVDSVTLHGTTNGARIKTWQGGRGYAKNIIFRNMIMDSVWNPIIIDQNYCDSAAPCKKQKSAVEVSNVLFKNIRGTSASKEAIKL SCSSGVPCHGIALENVKLTLKGGSGVAKSTCENAR |
Full Sequence |
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Protein Sequence Length: 265 Download |
APTALTFSSC KNLRLENLKL RNSQQIHMSV EDCSHVKLAH LSITAPGTRP NTDGIHIARS 60 RRVHVTDCTI KTGDDCISIE DGTENLHVKN ILCGPGHGIS IGSLGDHGSE AYVINVTVDS 120 VTLHGTTNGA RIKTWQGGRG YAKNIIFRNM IMDSVWNPII IDQNYCDSAA PCKKQKSAVE 180 VSNVLFKNIR GTSASKEAIK LSCSSGVPCH GIALENVKLT LKGGSGVAKS TCENARWRKS 240 GTVAPQPLYP HFRTIMSILE FRFS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 1.0e-68 | 2 | 236 | 239 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 2.0e-79 | 2 | 247 | 248 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 7.0e-81 | 1 | 235 | 235 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-87 | 1 | 249 | 249 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-88 | 1 | 246 | 246 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAC57273.1 | 0 | 1 | 241 | 176 | 416 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
DDBJ | BAC57275.1 | 0 | 1 | 247 | 154 | 400 | putative polygalacturonase precursor [Oryza sativa Japonica Group] |
DDBJ | BAC57279.1 | 0 | 1 | 247 | 176 | 422 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
GenBank | EAZ39077.1 | 0 | 1 | 241 | 176 | 416 | hypothetical protein OsJ_23509 [Oryza sativa Japonica Group] |
GenBank | EEC81719.1 | 0 | 1 | 247 | 176 | 422 | hypothetical protein OsI_25337 [Oryza sativa Indica Group] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-24 | 2 | 220 | 151 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1czf_B | 1e-16 | 15 | 234 | 139 | 355 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 1e-16 | 15 | 234 | 139 | 355 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1ib4_B | 1e-16 | 2 | 206 | 104 | 309 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1ib4_A | 1e-16 | 2 | 206 | 104 | 309 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO793085 | 196 | 52 | 247 | 0 |
FL930633 | 189 | 59 | 247 | 0 |
FL930634 | 185 | 63 | 247 | 0 |
BJ255300 | 199 | 50 | 247 | 0 |
CA139845 | 223 | 1 | 223 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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