Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00000652m |
Family | CE8 |
Protein Properties | Length: 576 Molecular Weight: 58828.8 Isoelectric Point: 8.452 |
Chromosome | Chromosome/Scaffold: 0106270 Start: 1107 End: 3432 |
Description | pectin methylesterase PCR fragment F |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 263 | 559 | 0 |
AVVALDGSGTHGSINEAIAAVTAANGGGGGSGGRKVIHVKAGRYEESVSISSKQKNVMLMGDGKGKTVIAGHKSAADGYTTYATATVAAMGSGFIAKGLT IVNTAGPGKGQAVALRVGGDLSVVYQCAIQAYQDTLYVHSNRQFYAEDDIAGTVDFIFGNAAVVIQNCDIQARRPNPGQKDTVTAQGRTDPNQNTGISIH KCRITGAPDLGGTPVYLGRPWQKYSRTVVMESFLDRSISPAGWLEWSGQFALNTLYYGEYSNTGFGAGTSKRVRWTGVHTSLSRSDATRFTVANFIM |
Full Sequence |
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Protein Sequence Length: 576 Download |
MHGLLWPWSR AIATVLLALS TAASLVAAGT QDEAAASRGG NVAVDDASRI AVSAAAAPAA 60 PWGANVSAIC QSTPYPSACE TALTSPASGS ARDPFAASVQ FAMSRAASAR ALARNVSGEA 120 SSSSPRRLRG APPSGAADCA ELLGISLDQL RDALAGDADG VTTWLSAALT NQGTCVDSLA 180 AEPVSAGRDA VRARVSALTQ FVATALALHV NKLNADARGG PPPSGAPTAT TPTTTFPSWV 240 TEHDRKLLVA PAGATSGGVT IDAVVALDGS GTHGSINEAI AAVTAANGGG GGSGGRKVIH 300 VKAGRYEESV SISSKQKNVM LMGDGKGKTV IAGHKSAADG YTTYATATVA AMGSGFIAKG 360 LTIVNTAGPG KGQAVALRVG GDLSVVYQCA IQAYQDTLYV HSNRQFYAED DIAGTVDFIF 420 GNAAVVIQNC DIQARRPNPG QKDTVTAQGR TDPNQNTGIS IHKCRITGAP DLGGTPVYLG 480 RPWQKYSRTV VMESFLDRSI SPAGWLEWSG QFALNTLYYG EYSNTGFGAG TSKRVRWTGV 540 HTSLSRSDAT RFTVANFIMG DSWLGGTGVT YTSGL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02713 | PLN02713 | 4.0e-138 | 69 | 575 | 543 | + Probable pectinesterase/pectinesterase inhibitor | ||
PLN02484 | PLN02484 | 2.0e-142 | 70 | 575 | 521 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02301 | PLN02301 | 2.0e-145 | 134 | 575 | 453 | + pectinesterase/pectinesterase inhibitor | ||
PLN02170 | PLN02170 | 6.0e-156 | 71 | 575 | 511 | + probable pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 8.0e-163 | 262 | 561 | 304 | + Pectinesterase. |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD19539.1 | 0 | 8 | 575 | 15 | 571 | putative pectinesterase [Oryza sativa Japonica Group] |
RefSeq | NP_001048322.1 | 0 | 8 | 575 | 25 | 581 | Os02g0783000 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001148248.1 | 0 | 44 | 575 | 52 | 578 | pectinesterase-2 [Zea mays] |
RefSeq | XP_002449226.1 | 0 | 12 | 560 | 1 | 569 | hypothetical protein SORBIDRAFT_05g006610 [Sorghum bicolor] |
RefSeq | XP_002454668.1 | 0 | 65 | 575 | 56 | 575 | hypothetical protein SORBIDRAFT_04g035200 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 262 | 575 | 8 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 259 | 575 | 1 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 5e-18 | 298 | 536 | 36 | 318 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 5e-18 | 298 | 536 | 36 | 318 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 7e-18 | 298 | 536 | 36 | 318 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |