y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00000761m |
Family | GH35 |
Protein Properties | Length: 262 Molecular Weight: 28300.5 Isoelectric Point: 7.1101 |
Chromosome | Chromosome/Scaffold: 0103743 Start: 399 End: 2118 |
Description | beta-galactosidase 8 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH35 | 34 | 226 | 0 |
LVIDGVRRVLVSGSIHYPRSTPDMWPGLIQKAKDGGLDVIETYVFWDIHEPVRGQYDFEGRKDLAAFVKAVADAGLYVHLRIGPYVCAEWNYGGFPLWLH FIPGVKFRTDNEPFKAEMQRFTAKVVDTMKGAGLYASQGGPIILSQIENEYGNIDSAYGAAGKAYMRWAAGMAVSLDTGVPWVMCQQADAPDP |
Full Sequence |
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Protein Sequence Length: 262 Download |
MAATALLLSA AAAVLLCLAG GSRATNVTYD HRALVIDGVR RVLVSGSIHY PRSTPDMWPG 60 LIQKAKDGGL DVIETYVFWD IHEPVRGQYD FEGRKDLAAF VKAVADAGLY VHLRIGPYVC 120 AEWNYGGFPL WLHFIPGVKF RTDNEPFKAE MQRFTAKVVD TMKGAGLYAS QGGPIILSQI 180 ENEYGNIDSA YGAAGKAYMR WAAGMAVSLD TGVPWVMCQQ ADAPDPLVRV RLVQFPTARN 240 GMNGLPLPVP DHTGTARGGC E* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02449 | Glyco_hydro_42 | 0.0004 | 49 | 203 | 172 | + Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues. | ||
COG1874 | LacA | 3.0e-18 | 27 | 186 | 171 | + Beta-galactosidase [Carbohydrate transport and metabolism] | ||
pfam01301 | Glyco_hydro_35 | 2.0e-104 | 33 | 250 | 222 | + Glycosyl hydrolases family 35. | ||
PLN03059 | PLN03059 | 1.0e-110 | 26 | 228 | 203 | + beta-galactosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0004565 | beta-galactosidase activity |
GO:0005975 | carbohydrate metabolic process |
GO:0009341 | beta-galactosidase complex |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY89299.1 | 0 | 22 | 230 | 28 | 239 | hypothetical protein OsI_10800 [Oryza sativa Indica Group] |
RefSeq | NP_001049591.1 | 0 | 22 | 230 | 126 | 334 | Os03g0255100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001146370.1 | 0 | 17 | 230 | 20 | 233 | hypothetical protein LOC100279948 [Zea mays] |
Swiss-Prot | Q10NX8 | 0 | 22 | 230 | 28 | 236 | BGAL6_ORYSJ RecName: Full=Beta-galactosidase 6; Short=Lactase 6; Flags: Precursor |
RefSeq | XP_002465536.1 | 0 | 17 | 230 | 27 | 240 | hypothetical protein SORBIDRAFT_01g040750 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3d3a_A | 1e-33 | 32 | 218 | 13 | 193 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3thd_D | 1e-29 | 22 | 201 | 6 | 179 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3thd_C | 1e-29 | 22 | 201 | 6 | 179 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3thd_B | 1e-29 | 22 | 201 | 6 | 179 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3thd_A | 1e-29 | 22 | 201 | 6 | 179 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
Signal Peptide | |||||
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Cleavage Site | |||||
24 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EC897116 | 209 | 20 | 228 | 0 |
EB158718 | 209 | 20 | 228 | 0 |
FL851301 | 202 | 20 | 221 | 0 |
DR789897 | 206 | 20 | 225 | 0 |
CB648825 | 207 | 20 | 226 | 0 |
Orthologous Group | |||||
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Species | ID | ||||
Brassica rapa | Bra003128 | Bra003353 | Bra021198 | ||
Linum usitatissimum | Lus10011237 | Lus10036109 | Lus10000271 | ||
Malus domestica | MDP0000127542.34.225 | MDP0000127542.34.225 |
Sequence Alignments (This image is cropped. Click for full image.) |
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