Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00000796m |
Family | CBM43 |
Protein Properties | Length: 449 Molecular Weight: 48784.2 Isoelectric Point: 7.7599 |
Chromosome | Chromosome/Scaffold: 0106631 Start: 2177 End: 3597 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 278 | 359 | 1.7e-23 |
WCVLRPDASASDPAVAGAVQYACQYSDCTSLGAGSSCGNLDARANVSYAFNQFFQAANQQKGACSFNNLSTIVTTDPSQGTC | |||
GH17 | 2 | 258 | 0 |
AAEQWVLQNVSTYVSKYGVDIRYVAIGNEPFLKSYKGRFEAATLPAVQNVQAALVKAGLARQVHVTVPLNADVYESPDGKPSSGDFRPDIAGLMLSLVRF LLDNGGVFTINIYPFLSLYADSNFPVDYAFFPSPGAPPSQASVQDGAVLYTNVFDANYDTLIAALEKHGLGAIPVVVGEIGWPTDGDRNANAANAQRFNQ GLFDRIIAGKGTPRRPRMPDVYVFALLDEDNKSVDPGNFERHWGVFNYDGSPKYRLS |
Full Sequence |
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Protein Sequence Length: 449 Download |
TAAEQWVLQN VSTYVSKYGV DIRYVAIGNE PFLKSYKGRF EAATLPAVQN VQAALVKAGL 60 ARQVHVTVPL NADVYESPDG KPSSGDFRPD IAGLMLSLVR FLLDNGGVFT INIYPFLSLY 120 ADSNFPVDYA FFPSPGAPPS QASVQDGAVL YTNVFDANYD TLIAALEKHG LGAIPVVVGE 180 IGWPTDGDRN ANAANAQRFN QGLFDRIIAG KGTPRRPRMP DVYVFALLDE DNKSVDPGNF 240 ERHWGVFNYD GSPKYRLSLA GGHPIVPARG VRYLSKQWCV LRPDASASDP AVAGAVQYAC 300 QYSDCTSLGA GSSCGNLDAR ANVSYAFNQF FQAANQQKGA CSFNNLSTIV TTDPSQGTCR 360 FKIMIDTGRH ELTGKSAAGR QVAVASSSWR AVLMLIGLAS LGVVTAWTLK VVRLLAKGSF 420 CYWQRDYLIY LLYHQTQLEE LSKLDYSF* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
COG5309 | COG5309 | 9.0e-5 | 172 | 250 | 82 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] |
pfam07983 | X8 | 6.0e-7 | 277 | 348 | 79 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. |
smart00768 | X8 | 4.0e-21 | 277 | 361 | 87 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
pfam00332 | Glyco_hydro_17 | 8.0e-53 | 1 | 258 | 261 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAP12947.1 | 0 | 2 | 372 | 96 | 466 | putative 1,3-beta-glucanase [Oryza sativa Japonica Group] |
GenBank | EAY90344.1 | 0 | 2 | 372 | 96 | 466 | hypothetical protein OsI_11921 [Oryza sativa Indica Group] |
RefSeq | NP_001147933.1 | 0 | 1 | 378 | 96 | 473 | glucan endo-1,3-beta-glucosidase 5 [Zea mays] |
RefSeq | XP_002467735.1 | 0 | 1 | 401 | 96 | 499 | hypothetical protein SORBIDRAFT_01g033200 [Sorghum bicolor] |
RefSeq | XP_002516181.1 | 0 | 2 | 396 | 109 | 498 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ghr_A | 2e-34 | 6 | 247 | 72 | 294 | A Chain A, High Resolution Structure Of E.coli Wrba With Fmn |
PDB | 1aq0_B | 2e-34 | 6 | 247 | 72 | 294 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 1aq0_A | 2e-34 | 6 | 247 | 72 | 294 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 2cyg_A | 3e-32 | 1 | 259 | 67 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_D | 2e-30 | 3 | 260 | 69 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO797198 | 375 | 2 | 375 | 0 |
EG389271 | 256 | 121 | 376 | 0 |
DT763058 | 289 | 27 | 311 | 0 |
AM721378 | 304 | 23 | 325 | 0 |
JG872839 | 291 | 30 | 318 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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