Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00000958m |
Family | GH17 |
Protein Properties | Length: 216 Molecular Weight: 22650.4 Isoelectric Point: 9.5015 |
Chromosome | Chromosome/Scaffold: 0102704 Start: 2522 End: 3407 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH17 | 14 | 215 | 0 |
PFSNSVDAALAAAGLGAIKVSTSVRFDAVANSFPPSSGAFAQGYMADIARYLAGTGAPLLANVYPYFAYRGNPRDISLGYATFRPGTTVRDSGNGLAYTN LFDAMVDAVVAALEKAGAPNVRVVVSESGWPSAGGFGASVDNARSYNQGLVDHVGRGTPKRPGALETFIFAMFNENQKDGDPTERNFGLFFPNKQPVYPI RF |
Full Sequence |
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Protein Sequence Length: 216 Download |
GPALIRPVTG TNKPFSNSVD AALAAAGLGA IKVSTSVRFD AVANSFPPSS GAFAQGYMAD 60 IARYLAGTGA PLLANVYPYF AYRGNPRDIS LGYATFRPGT TVRDSGNGLA YTNLFDAMVD 120 AVVAALEKAG APNVRVVVSE SGWPSAGGFG ASVDNARSYN QGLVDHVGRG TPKRPGALET 180 FIFAMFNENQ KDGDPTERNF GLFFPNKQPV YPIRF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00332 | Glyco_hydro_17 | 4.0e-100 | 31 | 215 | 189 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAL35900.1 | 0 | 9 | 215 | 128 | 334 | AF443600_1 endo-1,3-beta-glucanase [Oryza sativa] |
GenBank | EAY77183.1 | 0 | 9 | 215 | 128 | 334 | hypothetical protein OsI_05153 [Oryza sativa Indica Group] |
GenBank | EAZ14803.1 | 0 | 18 | 215 | 137 | 334 | hypothetical protein OsJ_04730 [Oryza sativa Japonica Group] |
RefSeq | NP_001045372.1 | 0 | 9 | 215 | 128 | 334 | Os01g0944700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002459077.1 | 0 | 14 | 215 | 135 | 336 | hypothetical protein SORBIDRAFT_03g045490 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ghs_B | 0 | 31 | 215 | 122 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghs_A | 0 | 31 | 215 | 122 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghr_A | 0 | 14 | 215 | 104 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1aq0_B | 0 | 14 | 215 | 104 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 1aq0_A | 0 | 14 | 215 | 104 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FE598987 | 188 | 31 | 216 | 0 |
CA290258 | 185 | 31 | 215 | 0 |
FE598988 | 178 | 41 | 216 | 0 |
CI121411 | 178 | 39 | 216 | 0 |
CA285291 | 172 | 44 | 215 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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