| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00001111m |
| Family | AA7 |
| Protein Properties | Length: 381 Molecular Weight: 41577.5 Isoelectric Point: 9.3951 |
| Chromosome | Chromosome/Scaffold: 0104579 Start: 392 End: 1547 |
| Description | FAD-binding Berberine family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| AA7 | 39 | 164 | 2.89999e-41 |
| TLPGGIGILLRKYGLAADNVLDALLVDARGRLLDRDAMGPDVFWAIRGGGGESFGVMLSWQVRLVPVPPTVTVFNVPVTAGQGAVDIVTQWQQVAPALPD NLMIRVVVQQQTANFQSLFLGTCDAL | |||
| Full Sequence |
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| Protein Sequence Length: 381 Download |
| MSALFNTLSP ATQANITYLE ACIYGRRNGW YLPSSGTRTL PGGIGILLRK YGLAADNVLD 60 ALLVDARGRL LDRDAMGPDV FWAIRGGGGE SFGVMLSWQV RLVPVPPTVT VFNVPVTAGQ 120 GAVDIVTQWQ QVAPALPDNL MIRVVVQQQT ANFQSLFLGT CDALLPVMSS RFPELGFNCS 180 YCREMTWIQS VPYIHLGSGS TVEDLLNRTT SAPVLANGYK ATSDYVRRAI PRDAWAAIFA 240 KLGQPNAALT ILVLDPLRRG DQRRAGGGDA VPAPCRRAVQ HPVHELLVHG RWGRGGADQV 300 DQGPVRVHGA NPREAYFNYR DLDLGRNIVV GNVSSYEAGK VWGEKYFKGN YKRLALAKGK 360 IDPDDYFRNE QSIPPLAQNK * |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam08031 | BBE | 8.0e-17 | 315 | 374 | 60 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD53702.1 | 0 | 46 | 380 | 187 | 523 | putative CPRD2 [Oryza sativa Japonica Group] |
| GenBank | EAZ01292.1 | 0 | 46 | 380 | 187 | 523 | hypothetical protein OsI_23321 [Oryza sativa Indica Group] |
| RefSeq | NP_001057833.1 | 0 | 46 | 380 | 192 | 528 | Os06g0549900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002438542.1 | 0 | 47 | 376 | 191 | 522 | hypothetical protein SORBIDRAFT_10g021690 [Sorghum bicolor] |
| RefSeq | XP_002438543.1 | 0 | 46 | 380 | 192 | 529 | hypothetical protein SORBIDRAFT_10g021700 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4dns_B | 0 | 46 | 376 | 168 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 4dns_A | 0 | 46 | 376 | 168 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_B | 0 | 46 | 379 | 166 | 499 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_A | 0 | 46 | 379 | 166 | 499 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsh_A | 0 | 46 | 379 | 166 | 499 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
| Metabolic Pathways | |||
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| Pathway Name | Reaction | EC | Protein Name |
| cannabinoid biosynthesis | RXN-7854 | EC-1.21.3 | tetrahydrocannabinolic acid synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| FE654807 | 264 | 118 | 368 | 0 |
| FF356562 | 282 | 79 | 350 | 0 |
| HX153974 | 245 | 147 | 381 | 0 |
| CJ905068 | 215 | 42 | 256 | 0 |
| CJ875124 | 215 | 42 | 256 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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