y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00001150m |
Family | CE8 |
Protein Properties | Length: 589 Molecular Weight: 63602 Isoelectric Point: 6.7857 |
Chromosome | Chromosome/Scaffold: 010556 Start: 10195 End: 12034 |
Description | Plant invertase/pectin methylesterase inhibitor superfamily |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 258 | 558 | 0 |
NVTVAKDGSGDFRNISAALDAMPGNYTGRYFIYVKEGVYEEMVNITNCMANVTMYGDGSKKSIVTGSRNILDGTRMWRTATFAVDGDSFTAISLGIRNTA GVEKQQALALRVKGDKAIFFNCRIEGNQDTLFAQAYRQFYRSCVISGTVDFIMGDAAAVFQRCVILVRQPRKGQPAVVTAHARRDHQQTTGFVIHRSRIV ANEQLASSTGKAAGAAATKVYLGRPWKEFARAVVMESDIEGFVRSEGYMPWEGKENLGTAFFGEFGNAGAGANLSGRKDMQGFHEMNKDRALQFTVGHFL H |
Full Sequence |
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Protein Sequence Length: 589 Download |
MPSDDGDPSR KRLVVGVLSA LMLVAMVVGT VAFLLNDKAG EEESKRNMSK TMRSVELFCA 60 PADYQGTCRE TLEGALSRSD PSEHPHAAAA AAIAAVERAL EQGFNRSTVL DAVRQSNDTL 120 VWEAMRDCRM LLGSCRDNVE RALASIAWRG VEGPVQDLQA WLSAVITFQG SCVDMFPKGE 180 VREEVKTTME KAREISSNAL AVIKQGAALS AMLDLHAEDL DDKKAGRGAR QQLKAAAWVS 240 REDRKLLAAA GKGGLTPNVT VAKDGSGDFR NISAALDAMP GNYTGRYFIY VKEGVYEEMV 300 NITNCMANVT MYGDGSKKSI VTGSRNILDG TRMWRTATFA VDGDSFTAIS LGIRNTAGVE 360 KQQALALRVK GDKAIFFNCR IEGNQDTLFA QAYRQFYRSC VISGTVDFIM GDAAAVFQRC 420 VILVRQPRKG QPAVVTAHAR RDHQQTTGFV IHRSRIVANE QLASSTGKAA GAAATKVYLG 480 RPWKEFARAV VMESDIEGFV RSEGYMPWEG KENLGTAFFG EFGNAGAGAN LSGRKDMQGF 540 HEMNKDRALQ FTVGHFLHGA EWIPDSGTPV SLGLSGSGAD DAGEETTE* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02468 | PLN02468 | 3.0e-107 | 38 | 574 | 539 | + putative pectinesterase/pectinesterase inhibitor | ||
PLN02314 | PLN02314 | 1.0e-113 | 113 | 569 | 472 | + pectinesterase | ||
PLN02990 | PLN02990 | 3.0e-114 | 38 | 569 | 544 | + Probable pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 3.0e-132 | 258 | 559 | 303 | + Pectinesterase. | ||
PLN02745 | PLN02745 | 2.0e-169 | 38 | 574 | 542 | + Putative pectinesterase/pectinesterase inhibitor |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY90351.1 | 0 | 38 | 576 | 38 | 602 | hypothetical protein OsI_11933 [Oryza sativa Indica Group] |
RefSeq | NP_001050306.1 | 0 | 38 | 576 | 38 | 602 | Os03g0399000 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002273499.1 | 0 | 43 | 574 | 70 | 596 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324181.1 | 0 | 43 | 574 | 67 | 592 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002467727.1 | 0 | 1 | 576 | 1 | 593 | hypothetical protein SORBIDRAFT_01g033140 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 257 | 574 | 7 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 255 | 574 | 1 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 6e-20 | 256 | 564 | 3 | 339 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 6e-20 | 256 | 564 | 3 | 339 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 6e-20 | 256 | 564 | 3 | 339 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |