| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00001203m |
| Family | GH33 |
| Protein Properties | Length: 414 Molecular Weight: 46076.1 Isoelectric Point: 6.6037 |
| Chromosome | Chromosome/Scaffold: 0101584 Start: 67 End: 3569 |
| Description | BNR/Asp-box repeat family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH33 | 114 | 403 | 8.3e-27 |
| RPFNNCHASTIVEIEKDNFLISYFGGAIEGAPDVKIWTQRYSDGYWHPPVVADEENATAMWNPVLFQLPSRELLLFYKIGEHPQNWSGAMKRSLNGGMSW SEREQLPPGILGPIKNKPFLLDDGRLLCGSSVESWNSWGAWLEVTEDAGRTWRKYGPIYVEGEKLGVIQPVPYQTTNGTIRMLLRSYQTIGRVCIADSSD GGLTWGYARKTELPNPNSGIDGIKMKDGRVVLAYNIISRGILKVAVSSDDGISWGEVLTLENTEGVEFSYPAVIQTMDELIHVTYTYNRT | |||
| Full Sequence |
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| Protein Sequence Length: 414 Download |
| MPIPTICSLS KQHKWKITAC VMLFFVVLVA SDSRFRTSFS KYLSSIVPSS GSSDETTSTH 60 ENQNLSSEHP TNLSNSKPGK QIEHGTYNMN TTSTNATSGW SIMKEEFTFP AVGRPFNNCH 120 ASTIVEIEKD NFLISYFGGA IEGAPDVKIW TQRYSDGYWH PPVVADEENA TAMWNPVLFQ 180 LPSRELLLFY KIGEHPQNWS GAMKRSLNGG MSWSEREQLP PGILGPIKNK PFLLDDGRLL 240 CGSSVESWNS WGAWLEVTED AGRTWRKYGP IYVEGEKLGV IQPVPYQTTN GTIRMLLRSY 300 QTIGRVCIAD SSDGGLTWGY ARKTELPNPN SGIDGIKMKD GRVVLAYNII SRGILKVAVS 360 SDDGISWGEV LTLENTEGVE FSYPAVIQTM DELIHVTYTY NRTQIKHVVL RPS* 420 |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| cd00260 | Sialidase | 0.0002 | 173 | 375 | 239 | + Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases. |
| COG4692 | COG4692 | 5.0e-28 | 110 | 412 | 359 | + Predicted neuraminidase (sialidase) [Carbohydrate transport and metabolism] |
| pfam13088 | BNR_2 | 1.0e-87 | 130 | 396 | 282 | + BNR repeat-like domain. This family of proteins contains BNR-like repeats suggesting these proteins may act as sialidases. |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACG41080.1 | 0 | 89 | 389 | 1 | 301 | hypothetical protein [Zea mays] |
| GenBank | EEC82140.1 | 0 | 7 | 406 | 7 | 412 | hypothetical protein OsI_26191 [Oryza sativa Indica Group] |
| RefSeq | NP_001059779.1 | 0 | 7 | 413 | 7 | 419 | Os07g0516000 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001131252.1 | 0 | 87 | 389 | 2 | 304 | hypothetical protein LOC100192565 [Zea mays] |
| RefSeq | XP_002460769.1 | 0 | 5 | 412 | 3 | 406 | hypothetical protein SORBIDRAFT_02g034675 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jkb_A | 0.002 | 196 | 318 | 444 | 564 | A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In Complex With 2,7-Anhydro-Neu5ac |
| PDB | 4fq4_A | 0.002 | 196 | 318 | 455 | 575 | A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In Complex With 2,7-Anhydro-Neu5ac |
| PDB | 4fpy_A | 0.002 | 196 | 318 | 455 | 575 | A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In Complex With 2,7-Anhydro-Neu5ac |
| PDB | 4fpo_B | 0.002 | 196 | 318 | 455 | 575 | A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In Complex With 2,7-Anhydro-Neu5ac |
| PDB | 4fpl_A | 0.002 | 196 | 318 | 455 | 575 | A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In Complex With 2,7-Anhydro-Neu5ac |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| JG813383 | 252 | 112 | 363 | 0 |
| FF344386 | 262 | 142 | 403 | 0 |
| JG862817 | 219 | 101 | 319 | 0 |
| EL689016 | 283 | 115 | 397 | 0 |
| FL735671 | 211 | 167 | 377 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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