| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00001262m |
| Family | GH3 |
| Protein Properties | Length: 554 Molecular Weight: 60541.5 Isoelectric Point: 7.5866 |
| Chromosome | Chromosome/Scaffold: 0103918 Start: 18 End: 3322 |
| Description | Glycosyl hydrolase family protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH3 | 104 | 339 | 0 |
| LSTRLGIPMIYGIDAVHGNNNVYNATLFPHNIGLGATRDPDLVRRIGVATALEVRATGIQYTFAPCIAVCRDPRWGRCYESYSEDHTIVQQMTDIILGLQ GEIPVNHTKGVPYVAGKDKVAACAKHFVGDGGTHNGINENNTIIDEHGLLSIHMPPYYDSIIKGVATIMVSYSSLNGVKMHANHDLVTGYLKSKLHFRGF VISDWLGIDRITSPPGANYTYSVQAGINAGIDMVMV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 554 Download |
| MTSTNISWAC LLLLCFASIG DAEYMKYKDP KQPINTRIKD LLGRMTLAEK IGQMTQIERQ 60 VASADVMKKY FIGSILSGGG SVPAPQASPS IWVNMVNEFQ KGALSTRLGI PMIYGIDAVH 120 GNNNVYNATL FPHNIGLGAT RDPDLVRRIG VATALEVRAT GIQYTFAPCI AVCRDPRWGR 180 CYESYSEDHT IVQQMTDIIL GLQGEIPVNH TKGVPYVAGK DKVAACAKHF VGDGGTHNGI 240 NENNTIIDEH GLLSIHMPPY YDSIIKGVAT IMVSYSSLNG VKMHANHDLV TGYLKSKLHF 300 RGFVISDWLG IDRITSPPGA NYTYSVQAGI NAGIDMVMVP YNYTEYIDDL TSLVRKGIVN 360 MSRIDDAVRR ILRVKFTMGL FENPLADLSF ADQLGKKEHR ELAREAVRKS LVLLKNGNSP 420 NQQFLPLPKK ARRILVAGSH ASNLGYQCGG WSIQWMGGTG NITTGTTILD AIKSTVADST 480 PVVHSENPDD SFMKHNDFSF SIIVVGEPPY SETVGDSTDL TILDPGPDTI RTVCSAVKCV 540 VVIVSGRPVV IEPY |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam01915 | Glyco_hydro_3_C | 6.0e-10 | 411 | 532 | 136 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
| PLN03080 | PLN03080 | 1.0e-32 | 5 | 450 | 498 | + Probable beta-xylosidase; Provisional | ||
| PRK15098 | PRK15098 | 3.0e-66 | 8 | 452 | 470 | + beta-D-glucoside glucohydrolase; Provisional | ||
| COG1472 | BglX | 1.0e-88 | 45 | 454 | 420 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
| pfam00933 | Glyco_hydro_3 | 2.0e-95 | 46 | 374 | 333 | + Glycosyl hydrolase family 3 N terminal domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAR14129.1 | 0 | 1 | 554 | 1 | 554 | exo-beta-glucanase [Lilium longiflorum] |
| GenBank | EEC71555.1 | 0 | 1 | 554 | 378 | 922 | hypothetical protein OsI_03907 [Oryza sativa Indica Group] |
| GenBank | EEE55456.1 | 0 | 25 | 554 | 1 | 520 | hypothetical protein OsJ_03617 [Oryza sativa Japonica Group] |
| RefSeq | NP_001044387.1 | 0 | 1 | 554 | 1 | 555 | Os01g0771900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002456420.1 | 0 | 1 | 554 | 21 | 574 | hypothetical protein SORBIDRAFT_03g035970 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1j8v_A | 0 | 23 | 553 | 1 | 532 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
| PDB | 1iex_A | 0 | 23 | 553 | 1 | 532 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
| PDB | 1iew_A | 0 | 23 | 553 | 1 | 532 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
| PDB | 1iev_A | 0 | 23 | 553 | 1 | 532 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
| PDB | 1ieq_A | 0 | 23 | 553 | 1 | 532 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| coumarin biosynthesis (via 2-coumarate) | RXN-8036 | EC-3.2.1.21 | β-glucosidase |
| linamarin degradation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
| linustatin bioactivation | RXN-13602 | EC-3.2.1.21 | β-glucosidase |
| linustatin bioactivation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
| lotaustralin degradation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
| neolinustatin bioactivation | RXN-13603 | EC-3.2.1.21 | β-glucosidase |
| neolinustatin bioactivation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
| taxiphyllin bioactivation | RXN-13600 | EC-3.2.1.21 | β-glucosidase |
