Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00001379m |
Family | GH10 |
Protein Properties | Length: 580 Molecular Weight: 63098.2 Isoelectric Point: 6.3811 |
Chromosome | Chromosome/Scaffold: 010286 Start: 7916 End: 11024 |
Description | Glycosyl hydrolase family 10 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 230 | 491 | 0 |
RTNFPLGSAMTRHILTNSAYQTWFASRFAVATFENEMKWYSTEPAPGREDYTVPDAMMAFAKSNGIAVRGHNVFWDQPSQQPAWVQSLPYPQLLAAASRR IRSVVSRYAGQVIGWDVVNENLHFNFYEGRFGWDASTAFYAAARLLDAGSALMFMNEFNTLEQPGDMAALPARYLQRLRQIIAAYSENGAGMAIGLEGHF TNPNIPYMRAALDTLAQAGIPIWLTEVDVAAGPAQAQHLEEVLREAYAHPAVQGIVLWSAWR |
Full Sequence |
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Protein Sequence Length: 580 Download |
MRKVAGGLMV ARLAFWLRWI ALLQGCMVGA LPYDYSASIE CLPEPLEPQY GGGILRNADF 60 SAGLRGWSTF GYGSIAESKS AAGNGFAVAL NRTRPYQSVS QKVYLQRDTH YTLSAWLQVG 120 DGSADVRAVV KTVGDFVHAG GAVAKSGCWS MLKGGLTAAS SGPAELYFES NATVDLWVDS 180 VSLNPFSRDE WAAHRAESVS AARKKTVRLQ ATDSAGNPLA GAAVSLDAVR TNFPLGSAMT 240 RHILTNSAYQ TWFASRFAVA TFENEMKWYS TEPAPGREDY TVPDAMMAFA KSNGIAVRGH 300 NVFWDQPSQQ PAWVQSLPYP QLLAAASRRI RSVVSRYAGQ VIGWDVVNEN LHFNFYEGRF 360 GWDASTAFYA AARLLDAGSA LMFMNEFNTL EQPGDMAALP ARYLQRLRQI IAAYSENGAG 420 MAIGLEGHFT NPNIPYMRAA LDTLAQAGIP IWLTEVDVAA GPAQAQHLEE VLREAYAHPA 480 VQGIVLWSAW RPEGCYVMCL TDNNFKNLPQ GDVVDKLIAE WRSTPRAGAT DAQGFFEAEL 540 VHGEYKVSVS HPALNNSVTR SVKVDLGSGS EHYFIDMQV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 7.0e-7 | 52 | 170 | 129 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 2.0e-26 | 198 | 487 | 314 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 2.0e-40 | 225 | 506 | 311 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 3.0e-64 | 266 | 514 | 275 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABF94504.1 | 0 | 10 | 577 | 1 | 567 | Glycosyl hydrolase family 10 protein, expressed [Oryza sativa (japonica cultivar-group)] |
GenBank | ACG36704.1 | 0 | 8 | 579 | 1 | 576 | 1,4-beta-xylanase [Zea mays] |
GenBank | ACL53134.1 | 0 | 41 | 579 | 16 | 555 | unknown [Zea mays] |
RefSeq | NP_001130600.1 | 0 | 8 | 579 | 20 | 595 | hypothetical protein LOC100191699 [Zea mays] |
RefSeq | XP_002468320.1 | 0 | 1 | 579 | 1 | 573 | hypothetical protein SORBIDRAFT_01g043760 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nq6_A | 8e-27 | 235 | 514 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 1e0v_A | 4e-23 | 235 | 506 | 16 | 290 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
PDB | 1v0n_A | 5e-23 | 235 | 506 | 16 | 290 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
PDB | 1v0m_A | 5e-23 | 235 | 506 | 16 | 290 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
PDB | 1v0l_A | 5e-23 | 235 | 506 | 16 | 290 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |