y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00001388m |
Family | GH14 |
Protein Properties | Length: 418 Molecular Weight: 46106.9 Isoelectric Point: 6.8943 |
Chromosome | Chromosome/Scaffold: 0104625 Start: 1617 End: 3601 |
Description | beta-amylase 1 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH14 | 1 | 381 | 0 |
MVDVWWGIAESDGPGRYNFAGYTELMEMARKTGLKVKAVMSFHQCGGNVGDSVTIPLPRWALEEMEKDRDLCYTDQWGRRNYEYVSLGCDAMPVLKGRTP VECYTDFMRAFRDHFADYLGNTIVEIQVGMGPAGELRYPSYPESNGTWRFPGIGAFQCNDRYMLSSLKEAAAAAGKPEWGHGGPTDAGSYNSWPEDTIFF RRENGGWSTEYGDFFLSWYSRMLLEHGDRVLAGAASVFSASPVAISVKVAGIHWHYGTRSHAPELTAGYYNTRRRDGYLPIARLLARHGAVLNFTCVEMR DQEQPREAQCMPEALVRQVAAAARAAGVGLAGENALPRYDAAAHDQVVASAAERAAGDRMVAFTYLRMGADLFHPDNWHRF |
Full Sequence |
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Protein Sequence Length: 418 Download |
MVDVWWGIAE SDGPGRYNFA GYTELMEMAR KTGLKVKAVM SFHQCGGNVG DSVTIPLPRW 60 ALEEMEKDRD LCYTDQWGRR NYEYVSLGCD AMPVLKGRTP VECYTDFMRA FRDHFADYLG 120 NTIVEIQVGM GPAGELRYPS YPESNGTWRF PGIGAFQCND RYMLSSLKEA AAAAGKPEWG 180 HGGPTDAGSY NSWPEDTIFF RRENGGWSTE YGDFFLSWYS RMLLEHGDRV LAGAASVFSA 240 SPVAISVKVA GIHWHYGTRS HAPELTAGYY NTRRRDGYLP IARLLARHGA VLNFTCVEMR 300 DQEQPREAQC MPEALVRQVA AAARAAGVGL AGENALPRYD AAAHDQVVAS AAERAAGDRM 360 VAFTYLRMGA DLFHPDNWHR FAAFVRRMSG AGSCREARGV AQATGSLVRE AAVALRS* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02161 | PLN02161 | 3.0e-113 | 2 | 389 | 394 | + beta-amylase | ||
PLN02905 | PLN02905 | 5.0e-116 | 1 | 390 | 396 | + beta-amylase | ||
PLN02801 | PLN02801 | 2.0e-157 | 1 | 388 | 395 | + beta-amylase | ||
PLN00197 | PLN00197 | 0 | 1 | 415 | 427 | + beta-amylase; Provisional | ||
PLN02803 | PLN02803 | 0 | 1 | 392 | 392 | + beta-amylase |
Gene Ontology | |
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GO Term | Description |
GO:0000272 | polysaccharide catabolic process |
GO:0016161 | beta-amylase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY78842.1 | 0 | 1 | 417 | 113 | 536 | hypothetical protein OsI_33946 [Oryza sativa Indica Group] |
GenBank | EAZ16360.1 | 0 | 1 | 417 | 113 | 535 | hypothetical protein OsJ_31822 [Oryza sativa Japonica Group] |
RefSeq | NP_001064798.1 | 0 | 1 | 417 | 113 | 535 | Os10g0465700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001147532.1 | 0 | 1 | 417 | 123 | 544 | beta-amylase [Zea mays] |
RefSeq | XP_002467119.1 | 0 | 1 | 417 | 125 | 547 | hypothetical protein SORBIDRAFT_01g019850 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1wdp_A | 0 | 1 | 388 | 51 | 441 | A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase |
PDB | 1q6c_A | 0 | 1 | 388 | 51 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
PDB | 1bfn_A | 0 | 1 | 388 | 51 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
PDB | 1ukp_D | 0 | 1 | 388 | 51 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
PDB | 1ukp_C | 0 | 1 | 388 | 51 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO779314 | 408 | 21 | 416 | 0 |
HO826564 | 375 | 18 | 389 | 0 |
FL804155 | 268 | 7 | 271 | 0 |
JG622609 | 289 | 18 | 306 | 0 |
FL751579 | 240 | 20 | 259 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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