Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00001518m |
Family | PL1 |
Protein Properties | Length: 453 Molecular Weight: 50872.7 Isoelectric Point: 9.0432 |
Chromosome | Chromosome/Scaffold: 0104945 Start: 695 End: 2839 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 171 | 371 | 0 |
ITFAKTMIISLKEELIIRGDKTIDGRGVQVRIANGSQLTVQFANNVIIHNIHIHDLISSNKNGGNIRDSPDHFGWRTVSDGDGITVFGSTNVWLDHLSLS NCQDGLIDVIAKSTGVTISNCHMTNHNDVMLFSSSDSHPEDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSKAPTIISQGNRYI A |
Full Sequence |
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Protein Sequence Length: 453 Download |
MEAGFQWSRP GSLVLYVVVV VLSAAVSSEA NIGEFDDYWR QRKLMADAAA EATYKHDPVE 60 VANQLNRAVH RSVEKEEMSA RREMMAQKKK GNKYKGPCLA TNPIDRCWRC RQDWATDRKR 120 LARCARGFGR NTTGGLAGKF YVVTDGTDED VVNPRPGTLR WAVIQYEPLW ITFAKTMIIS 180 LKEELIIRGD KTIDGRGVQV RIANGSQLTV QFANNVIIHN IHIHDLISSN KNGGNIRDSP 240 DHFGWRTVSD GDGITVFGST NVWLDHLSLS NCQDGLIDVI AKSTGVTISN CHMTNHNDVM 300 LFSSSDSHPE DQIMQITVAF NHFGRGLVQR MPRCRWGFFH VVNNDYTHWL MYAIGGSKAP 360 TIISQGNRYI APPNLAAKQV TKQHDAPESV WKNWVWHSED DLFMEGAYFT VTGGQINRQF 420 NKKDLIKPKP GSYVTRLTRF SGSLDCRPGK PC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 2.0e-13 | 31 | 84 | 54 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 1.0e-20 | 252 | 367 | 128 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 5.0e-60 | 182 | 369 | 201 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-64 | 177 | 373 | 208 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACF87417.1 | 0 | 5 | 452 | 7 | 444 | unknown [Zea mays] |
RefSeq | NP_001057945.1 | 0 | 27 | 452 | 30 | 448 | Os06g0583900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001150723.1 | 0 | 1 | 452 | 1 | 451 | pectate lyase [Zea mays] |
RefSeq | XP_002437204.1 | 0 | 2 | 452 | 3 | 454 | hypothetical protein SORBIDRAFT_10g022830 [Sorghum bicolor] |
RefSeq | XP_002453531.1 | 0 | 5 | 452 | 8 | 445 | hypothetical protein SORBIDRAFT_04g007450 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 102 | 442 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 102 | 442 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-19 | 130 | 360 | 19 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 0.0000000000008 | 182 | 382 | 80 | 299 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 0.0000000000008 | 182 | 382 | 80 | 299 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |