y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00001675m |
Family | GH14 |
Protein Properties | Length: 491 Molecular Weight: 53659.6 Isoelectric Point: 6.0319 |
Chromosome | Chromosome/Scaffold: 0102813 Start: 382 End: 2566 |
Description | beta-amylase 6 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH14 | 60 | 471 | 0 |
LDVMSTENELEDAEGLRRQLRRLRGAGVDGVMVDVWWGIVEGAGPGRYEWRAYRELFGVVQAEGLKLQAIMSFHACGGNVGDAVSIPIPRWVREVGEADP DVFYTSPGGVRNQEYLTIGVDDKPLFHGRTAIQLYADFMRSFRENMADFLDSGLIVDIEVGLGPAGELRYPSYAETQGWVFPGIGQFQCYDKYLAADFKA AAAAAGHPEWDLPRDGGEVNDTPEDTGFFAAEGGTYLSEQGRFFLTWYSSRLIAHGDRVLDEANRAFLGCPVKLAAKVSGIHWWYRHPSHAAELAAGYYN LGGRDGYRPIARALARHGGAVLNFTCAEMRDAEQPAGALSSPERLVRQALSAGWREGAEVACENALSRYDRAGYNQMLLSARPNGAGGRRVAAVTYLRLS DELLAGNNFRIF |
Full Sequence |
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Protein Sequence Length: 491 Download |
MLRSSPASPV KPQQWTVCRS GAAVVASPPP VVAVAPRTVA SAPLRALTTE SAETHPVPEL 60 DVMSTENELE DAEGLRRQLR RLRGAGVDGV MVDVWWGIVE GAGPGRYEWR AYRELFGVVQ 120 AEGLKLQAIM SFHACGGNVG DAVSIPIPRW VREVGEADPD VFYTSPGGVR NQEYLTIGVD 180 DKPLFHGRTA IQLYADFMRS FRENMADFLD SGLIVDIEVG LGPAGELRYP SYAETQGWVF 240 PGIGQFQCYD KYLAADFKAA AAAAGHPEWD LPRDGGEVND TPEDTGFFAA EGGTYLSEQG 300 RFFLTWYSSR LIAHGDRVLD EANRAFLGCP VKLAAKVSGI HWWYRHPSHA AELAAGYYNL 360 GGRDGYRPIA RALARHGGAV LNFTCAEMRD AEQPAGALSS PERLVRQALS AGWREGAEVA 420 CENALSRYDR AGYNQMLLSA RPNGAGGRRV AAVTYLRLSD ELLAGNNFRI FRTFVRKMHA 480 GLLDTLWFLF * 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02705 | PLN02705 | 2.0e-107 | 98 | 479 | 385 | + beta-amylase | ||
PLN02905 | PLN02905 | 3.0e-135 | 60 | 479 | 425 | + beta-amylase | ||
PLN00197 | PLN00197 | 1.0e-136 | 98 | 481 | 390 | + beta-amylase; Provisional | ||
PLN02803 | PLN02803 | 4.0e-150 | 98 | 481 | 387 | + beta-amylase | ||
PLN02801 | PLN02801 | 0 | 60 | 480 | 426 | + beta-amylase |
Gene Ontology | |
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GO Term | Description |
GO:0000272 | polysaccharide catabolic process |
GO:0016161 | beta-amylase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN28226.1 | 0 | 1 | 482 | 1 | 527 | unknown [Zea mays] |
EMBL | CAA76131.1 | 0 | 1 | 480 | 11 | 529 | beta-amylase [Triticum aestivum] |
GenBank | EEC82222.1 | 0 | 85 | 480 | 157 | 562 | hypothetical protein OsI_26370 [Oryza sativa Indica Group] |
RefSeq | NP_001059906.1 | 0 | 85 | 480 | 126 | 530 | Os07g0543100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002460819.1 | 0 | 1 | 482 | 1 | 532 | hypothetical protein SORBIDRAFT_02g035590 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1wdp_A | 0 | 60 | 480 | 20 | 443 | A Chain A, Crystal Structure Of Human Pofut2 E54a Mutant In Complex With Gdp- Fucose |
PDB | 1q6c_A | 0 | 60 | 480 | 20 | 443 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
PDB | 1bfn_A | 0 | 60 | 480 | 20 | 443 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
PDB | 1ukp_D | 0 | 60 | 480 | 20 | 443 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
PDB | 1ukp_C | 0 | 60 | 480 | 20 | 443 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO777976 | 388 | 98 | 480 | 0 |
HO803971 | 356 | 130 | 480 | 0 |
HO782669 | 341 | 147 | 482 | 0 |
FL752675 | 231 | 125 | 355 | 0 |
FL752675 | 21 | 356 | 376 | 0.004 |
Sequence Alignments (This image is cropped. Click for full image.) |
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