Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00001793m |
Family | AA7 |
Protein Properties | Length: 535 Molecular Weight: 58100.5 Isoelectric Point: 5.7572 |
Chromosome | Chromosome/Scaffold: 010194 Start: 4316 End: 6400 |
Description | cytokinin oxidase 3 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 63 | 251 | 1.7e-25 |
VEAVPNGVFHPTSPADIVALIRHLISQPKPFAVVPRGQGHSSRGQALAPGGTVIAMRSMGRGDHNHHVNMSSSPDQLWVDAGGEQLWADHGLAPRVWTDY LHITGGGTLSNGGIGGQAFWHGPQISNVHELDVVTGMGEMITCSPDKNSDLFFAALGGLGQFGIITRARIVLEPAPKRVLWVRIAYTDV |
Full Sequence |
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Protein Sequence Length: 535 Download |
MMPRACPATF LMVTSFLPTI NHFHMVASVD LADDDISSLD IVSKIHTDHD SITKASSDFG 60 HIVEAVPNGV FHPTSPADIV ALIRHLISQP KPFAVVPRGQ GHSSRGQALA PGGTVIAMRS 120 MGRGDHNHHV NMSSSPDQLW VDAGGEQLWA DHGLAPRVWT DYLHITGGGT LSNGGIGGQA 180 FWHGPQISNV HELDVVTGMG EMITCSPDKN SDLFFAALGG LGQFGIITRA RIVLEPAPKR 240 VLWVRIAYTD VDTFTSDQEL LISEPSSGSG FDYVEGQVQL NRTLTEGRRS SSFFSASELD 300 QLAKLVLDTG STAIYYIEGA MYYDDDTASF VDQKLESLLE ELNFVPGFAF VRDVSYVEFL 360 DRVGREEQKL RAAGAWDVPH PWLNLFVPRS RILDFDAGVF RGILRDAKPA GPVLMYPMNR 420 GRWDGRMTAA TPGGGEGVFY AVGMLRSAVA AGDLERLERE NAAVRAFCDQ EGVGCTQYLP 480 HHASPDGWRR HFGEKWGKLA ALKRRYDPRG ILSPGQGIFP AAAGGHEAGS DDSL* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam01565 | FAD_binding_4 | 2.0e-14 | 67 | 206 | 146 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
COG0277 | GlcD | 1.0e-18 | 44 | 518 | 494 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam09265 | Cytokin-bind | 3.0e-144 | 238 | 519 | 285 | + Cytokinin dehydrogenase 1, FAD and cytokinin binding. Members of this family adopt an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. They are predominantly found in plant cytokinin dehydrogenase 1, where they are capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin. | ||
PLN02441 | PLN02441 | 0 | 2 | 522 | 530 | + cytokinin dehydrogenase |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0009690 | cytokinin metabolic process |
GO:0016491 | oxidoreductase activity |
GO:0019139 | cytokinin dehydrogenase activity |
GO:0050660 | flavin adenine dinucleotide binding |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD61835.1 | 0 | 1 | 518 | 1 | 529 | putative cytokinin oxidase [Oryza sativa Japonica Group] |
GenBank | EEC80843.1 | 0 | 42 | 518 | 1 | 487 | hypothetical protein OsI_23446 [Oryza sativa Indica Group] |
RefSeq | XP_002438603.1 | 0 | 1 | 534 | 1 | 549 | hypothetical protein SORBIDRAFT_10g022590 [Sorghum bicolor] |
RefSeq | XP_002451780.1 | 0 | 35 | 525 | 34 | 530 | hypothetical protein SORBIDRAFT_04g007740 [Sorghum bicolor] |
RefSeq | XP_002453544.1 | 0 | 2 | 525 | 1 | 533 | hypothetical protein SORBIDRAFT_04g007730 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3s1c_A | 0 | 36 | 519 | 20 | 515 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose |
PDB | 3dq0_A | 0 | 36 | 519 | 20 | 515 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose |
PDB | 3c0p_A | 0 | 36 | 519 | 20 | 515 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose |
PDB | 3bw7_A | 0 | 36 | 519 | 20 | 515 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose |
PDB | 2qkn_A | 0 | 36 | 519 | 20 | 515 | A Chain A, Crystal Structure Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With Phenylurea Inhibitor Cppu |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
cytokinins degradation | RXN-4621 | EC-1.5.99 | isopentenyladenine:FAD oxidoreductase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO781924 | 486 | 55 | 520 | 0 |
EC873044 | 273 | 179 | 445 | 0 |
ES837714 | 299 | 154 | 452 | 0 |
CO121610 | 266 | 179 | 441 | 0 |
GE602994 | 253 | 271 | 518 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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