Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00001796m |
Family | CE8 |
Protein Properties | Length: 194 Molecular Weight: 21758.5 Isoelectric Point: 5.4937 |
Chromosome | Chromosome/Scaffold: 0107715 Start: 1083 End: 3457 |
Description | pectin methylesterase 31 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 44 | 190 | 0 |
QETLHLHGGKQFFKNCYIEGNCDFIFGDSTALLEHCHTHCKSTGYITAHGRKSSSESTGFVFFKCVITGNGEAVYMYLGRPWDPFGRVVFVETFMDQDHC IEPVGWHNWDRPENEQTACFCEYRCSSPGSSMLEWVAWCKKVVSDEA |
Full Sequence |
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Protein Sequence Length: 194 Download |
MATRIKHTQS TEVIGTGTFS SAAVIVEGDD FIAENAIFKN SAPQETLHLH GGKQFFKNCY 60 IEGNCDFIFG DSTALLEHCH THCKSTGYIT AHGRKSSSES TGFVFFKCVI TGNGEAVYMY 120 LGRPWDPFGR VVFVETFMDQ DHCIEPVGWH NWDRPENEQT ACFCEYRCSS PGSSMLEWVA 180 WCKKVVSDEA IPFL |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam01095 | Pectinesterase | 2.0e-42 | 13 | 193 | 221 | + Pectinesterase. | ||
PLN02432 | PLN02432 | 7.0e-46 | 44 | 194 | 153 | + putative pectinesterase | ||
PLN02665 | PLN02665 | 3.0e-47 | 17 | 194 | 212 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 4.0e-54 | 17 | 194 | 211 | + pectinesterase family protein | ||
PLN02773 | PLN02773 | 2.0e-106 | 2 | 194 | 219 | + pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY78435.1 | 0 | 2 | 194 | 94 | 310 | hypothetical protein OsI_33526 [Oryza sativa Indica Group] |
RefSeq | NP_001064567.1 | 0 | 2 | 194 | 94 | 310 | Os10g0407000 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001151351.1 | 0 | 2 | 194 | 82 | 298 | pectinesterase-1 [Zea mays] |
RefSeq | NP_566842.1 | 0 | 2 | 194 | 75 | 291 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002464636.1 | 0 | 2 | 194 | 139 | 355 | hypothetical protein SORBIDRAFT_01g022290 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 5e-25 | 15 | 181 | 80 | 281 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 3e-22 | 13 | 193 | 74 | 292 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 0.000000000007 | 44 | 175 | 153 | 313 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 0.000000000007 | 44 | 175 | 153 | 313 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 0.000000000007 | 44 | 175 | 153 | 313 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO303328 | 217 | 4 | 194 | 0 |
GD021882 | 210 | 11 | 194 | 0 |
HX188750 | 215 | 6 | 194 | 0 |
HX188723 | 194 | 2 | 169 | 0 |
EG389297 | 215 | 6 | 194 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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