| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00002022m |
| Family | CBM43 |
| Protein Properties | Length: 445 Molecular Weight: 47809.4 Isoelectric Point: 5.4146 |
| Chromosome | Chromosome/Scaffold: 0105547 Start: 88 End: 2632 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM43 | 320 | 399 | 2.1e-27 |
| WCVANPARNLDSVSDHMKLACSMADCTTLYYGGSCYGIGQKGNISYAFNSYYQQQKQDPKSCDFGGLGMITYLDPSMGEC | |||
| GH17 | 1 | 299 | 0 |
| MRANRISKVKLFDADPGVLRALAGSGIQVMVGVTNGELASIAGSQGAADAWVAQNVSRYVGRGGVDIRYIAVGNEPFLTSYQGQFESYIIPAMTNIQQSL VKANLASYIKLVVPCNADAYESASVPSQGVFRAELTQIMTQLAAFLSSSGAPFVVNIYPFLSLYQNSDFPQDYAFFEGSTHPLVDGPNVYYNAFDGNFDT LVSALGKIGYGNLPIAIGEIGWPTEGAPSANLTAARAFNQGLINRISSNKGTPLRPGVPPADVYLFSLLDEEQKSILPGNFERHWGIFSFDGQAKYPLN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 445 Download |
| MRANRISKVK LFDADPGVLR ALAGSGIQVM VGVTNGELAS IAGSQGAADA WVAQNVSRYV 60 GRGGVDIRYI AVGNEPFLTS YQGQFESYII PAMTNIQQSL VKANLASYIK LVVPCNADAY 120 ESASVPSQGV FRAELTQIMT QLAAFLSSSG APFVVNIYPF LSLYQNSDFP QDYAFFEGST 180 HPLVDGPNVY YNAFDGNFDT LVSALGKIGY GNLPIAIGEI GWPTEGAPSA NLTAARAFNQ 240 GLINRISSNK GTPLRPGVPP ADVYLFSLLD EEQKSILPGN FERHWGIFSF DGQAKYPLNL 300 GLGNSVLKNA KEVPYLPSRW CVANPARNLD SVSDHMKLAC SMADCTTLYY GGSCYGIGQK 360 GNISYAFNSY YQQQKQDPKS CDFGGLGMIT YLDPSMGECR FLVGVDDSKS SSAASCGTGC 420 CGVCCGLWVL AFWVFMYLRM MGLA* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 0.0001 | 124 | 291 | 186 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 3.0e-18 | 319 | 388 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 8.0e-32 | 320 | 401 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 8.0e-77 | 2 | 299 | 299 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAZ06546.1 | 0 | 1 | 417 | 57 | 473 | hypothetical protein OsI_28792 [Oryza sativa Indica Group] |
| GenBank | EEC84224.1 | 0 | 1 | 442 | 46 | 486 | hypothetical protein OsI_30642 [Oryza sativa Indica Group] |
| RefSeq | NP_001062739.1 | 0 | 1 | 442 | 46 | 486 | Os09g0272300 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001141759.1 | 0 | 1 | 444 | 49 | 492 | hypothetical protein LOC100273895 [Zea mays] |
| RefSeq | XP_002459936.1 | 0 | 1 | 444 | 49 | 492 | hypothetical protein SORBIDRAFT_02g017290 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3ur8_B | 1.96182e-44 | 3 | 303 | 26 | 317 | A Chain A, Crystal Structure Of Alpha-Galactosidase I From Mortierella Vinacea |
| PDB | 3ur8_A | 1.96182e-44 | 3 | 303 | 26 | 317 | A Chain A, Crystal Structure Of Alpha-Galactosidase I From Mortierella Vinacea |
| PDB | 3ur7_B | 1.96182e-44 | 3 | 303 | 26 | 317 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 3ur7_A | 1.96182e-44 | 3 | 303 | 26 | 317 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 4gzj_A | 2.00386e-43 | 3 | 303 | 26 | 317 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
