| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00002063m |
| Family | GT5 |
| Protein Properties | Length: 552 Molecular Weight: 61798 Isoelectric Point: 5.8295 |
| Chromosome | Chromosome/Scaffold: 010507 Start: 1258 End: 6980 |
| Description | Glycogen/starch synthases, ADP-glucose type |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT5 | 45 | 541 | 0 |
| IVFVTGEASPYAKSGGLGDVCGSLPVALAARGHRVMVVMPRYLNGTSDKNYANAFYTKKHIRIPCFGGDHEVTFFHEYRDSVDWVFVDHPSYHRPGNLYG DKFGAYGDNQFRYTLLCYAACEAPLVLELGGYIYGQNCMFVVNDWHASLVPVLLAAKYRPFGVYKDSRSILVIHNLAHQGVEPASTYPDLGLPPEWYGAL EWVFPEWARRHALDKGEAVNFLKGAVVTADRIVTVSKGYSWEVTTAEGGQGLDELLSSRKSVLNGIVNGIDINDWNPATDEHIPYHYSADDLSGKAKCKA ALQKELGLPIRPDVPLIGFIGRLDYQKGIDLIKLIMPNLMREDIQFVMLGSGDQELEDWMRSTESNFRDKFRGWVGFSVPVSHRITAGCDILLMPSRFEP CGLNQLYAMQYGTVPVVHATGGLRDTVENFNPFGDNGEQGTGWAFAPLTTENMLWTLRTAISTYREHKSSWEGLMKRGMSKDFTWDHAAEQYEQIFQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 552 Download |
| IAENSINNTV VVESEQDSKI MVGKEQESEI MVGKEQARAK VTHSIVFVTG EASPYAKSGG 60 LGDVCGSLPV ALAARGHRVM VVMPRYLNGT SDKNYANAFY TKKHIRIPCF GGDHEVTFFH 120 EYRDSVDWVF VDHPSYHRPG NLYGDKFGAY GDNQFRYTLL CYAACEAPLV LELGGYIYGQ 180 NCMFVVNDWH ASLVPVLLAA KYRPFGVYKD SRSILVIHNL AHQGVEPAST YPDLGLPPEW 240 YGALEWVFPE WARRHALDKG EAVNFLKGAV VTADRIVTVS KGYSWEVTTA EGGQGLDELL 300 SSRKSVLNGI VNGIDINDWN PATDEHIPYH YSADDLSGKA KCKAALQKEL GLPIRPDVPL 360 IGFIGRLDYQ KGIDLIKLIM PNLMREDIQF VMLGSGDQEL EDWMRSTESN FRDKFRGWVG 420 FSVPVSHRIT AGCDILLMPS RFEPCGLNQL YAMQYGTVPV VHATGGLRDT VENFNPFGDN 480 GEQGTGWAFA PLTTENMLWT LRTAISTYRE HKSSWEGLMK RGMSKDFTWD HAAEQYEQIF 540 QWAFIDQPYV R* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK14099 | PRK14099 | 4.0e-108 | 44 | 541 | 508 | + glycogen synthase; Provisional | ||
| COG0297 | GlgA | 5.0e-148 | 45 | 543 | 506 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 45 | 542 | 498 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| TIGR02095 | glgA | 0 | 45 | 541 | 498 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| PRK00654 | glgA | 0 | 45 | 541 | 504 | + glycogen synthase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| Swiss-Prot | A2Y9M4 | 0 | 11 | 550 | 101 | 640 | SSY1_ORYSI RecName: Full=Soluble starch synthase 1, chloroplastic/amyloplastic; AltName: Full=Starch synthase I; AltName: Full=SSS 1; Flags: Precursor |
| GenBank | ACY56162.1 | 0 | 11 | 550 | 101 | 640 | soluble starch synthase I [Oryza sativa Indica Group] |
| GenBank | EAZ35910.1 | 0 | 11 | 550 | 101 | 640 | hypothetical protein OsJ_20213 [Oryza sativa Japonica Group] |
| RefSeq | NP_001056881.1 | 0 | 11 | 550 | 101 | 640 | Os06g0160700 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001104892.1 | 0 | 1 | 550 | 100 | 639 | plastid starch synthase I precursor [Zea mays] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vuf_A | 0 | 44 | 540 | 11 | 508 | A Chain A, Crystal Structure Of A Rice Os3bglu6 Beta-glucosidase |
| PDB | 3vue_A | 0 | 44 | 540 | 11 | 508 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
| PDB | 3d1j_A | 0 | 45 | 540 | 3 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 45 | 540 | 3 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 45 | 540 | 3 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO595058 | 491 | 60 | 549 | 0 |
| GO872237 | 346 | 203 | 548 | 0 |
| GO885224 | 352 | 13 | 364 | 0 |
| GO885136 | 336 | 13 | 348 | 0 |
| GO842198 | 335 | 67 | 401 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
