| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00002207m |
| Family | GH116 |
| Protein Properties | Length: 786 Molecular Weight: 88309.6 Isoelectric Point: 5.9617 |
| Chromosome | Chromosome/Scaffold: 010545 Start: 3410 End: 10884 |
| Description | Beta-glucosidase, GBA2 type family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH116 | 369 | 731 | 0 |
| GKFLYLEGIEYFMWCTYDVHFYASFALLDLFPKIELSIQRDFARAVLREDKSRVRFLADGAWGIRKVIGAVAHDLGAHNPWHELNAYNIHDTSRWKDLNP KFVLQIYRDFAATGDMSFGKDVWPAVCTAMEYMEQFDRDGDGMIENDGFPDQTYDAWTVQGVSAYCGCLWLAALQATAALARSLGHDDYAERCMIRFAKA KSVFEARLWNGSYFNYDSGTSYKSRSIQADQLAGQWYTASSGLPPLFEEDRIKCTLQKIFDYNVMRVKGGRMGAVNGMHPNGKVDETCMQSREIWTGVTY SLAATMLLHGMEHQAFTTAEGIYIAGWSEEGYGYWFQTPEAWTVDGHYRSLIYMRPLAIWGMQ | |||
| Full Sequence |
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| Protein Sequence Length: 786 Download |
| IFVTRGRNKK YASVLAPGQL DGLQKSSDDG ISSWDWKLKG DHSTYHALFP RAWTVYDGEP 60 DPELKVSCRQ ISPFIPHNYE ESSLPTSVFV YTLVNTGKER AKVSLLMTWA NSIGGLSHHT 120 GGHVNEPFIG ENGVSGVLLH HKTANNNPPV TFAIAACENQ NVNVTVLPVF GLSGESSVTA 180 REMWGTMVQD GSFDRDNFNA GVSMPSSLGD TVCAAVSAST WVEPHGRCTV VFALAWSAPK 240 VKFKKGSTYY RRYTKFYGTS PRSAVNLVQD ALMKYKHWEE EIDKWQTPIL RDERLPEWYK 300 ITLFNELYFL VAGGTIWIDS EYLVVDADNK SNSSPIEDGD SPLNDSTCNS TVPQIGFDPH 360 EIDDKENVGK FLYLEGIEYF MWCTYDVHFY ASFALLDLFP KIELSIQRDF ARAVLREDKS 420 RVRFLADGAW GIRKVIGAVA HDLGAHNPWH ELNAYNIHDT SRWKDLNPKF VLQIYRDFAA 480 TGDMSFGKDV WPAVCTAMEY MEQFDRDGDG MIENDGFPDQ TYDAWTVQGV SAYCGCLWLA 540 ALQATAALAR SLGHDDYAER CMIRFAKAKS VFEARLWNGS YFNYDSGTSY KSRSIQADQL 600 AGQWYTASSG LPPLFEEDRI KCTLQKIFDY NVMRVKGGRM GAVNGMHPNG KVDETCMQSR 660 EIWTGVTYSL AATMLLHGME HQAFTTAEGI YIAGWSEEGY GYWFQTPEAW TVDGHYRSLI 720 YMRPLAIWGM QQALSPPMSI LKAPKVNAMD RAHISPGTFQ FLQDSVRKMT PKNGCFGNTV 780 FNWDC* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3408 | GDB1 | 0.0005 | 455 | 601 | 169 | + Glycogen debranching enzyme [Carbohydrate transport and metabolism] | ||
| pfam12215 | GBA2_N | 7.0e-47 | 26 | 278 | 261 | + beta-Glucocerebrosidase 2 N terminal. This domain is found in bacteria, archaea and eukaryotes. This domain is typically between 320 to 354 amino acids in length. This domain is found associated with pfam04685. This domain is found in the protein beta-Glucocerebrosidase 2. It is found just after the extreme N terminus. This protein is located in the ER. The N terminal is thought to be the luminal domain while the C terminal is the cytosolic domain. The catalytic domain of GBA-2 is unknown. | ||
| COG4354 | COG4354 | 3.0e-94 | 28 | 734 | 733 | + Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism] | ||
| pfam04685 | DUF608 | 9.0e-154 | 369 | 732 | 368 | + Protein of unknown function, DUF608. This family represents a conserved region with a pankaryotic distribution in a number of uncharacterized proteins. | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0004348 | glucosylceramidase activity |
| GO:0006665 | sphingolipid metabolic process |
| GO:0016021 | integral to membrane |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL31035.1 | 0 | 1 | 785 | 136 | 967 | AC078948_19 unknown protein [Oryza sativa Japonica Group] |
| GenBank | EEC67156.1 | 0 | 1 | 785 | 143 | 974 | hypothetical protein OsI_34005 [Oryza sativa Indica Group] |
| GenBank | EEC81952.1 | 0 | 4 | 785 | 83 | 850 | hypothetical protein OsI_25831 [Oryza sativa Indica Group] |
| GenBank | EEE67087.1 | 0 | 4 | 785 | 83 | 838 | hypothetical protein OsJ_24071 [Oryza sativa Japonica Group] |
| RefSeq | NP_001064833.1 | 0 | 1 | 785 | 143 | 974 | Os10g0473400 [Oryza sativa (japonica cultivar-group)] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| GT051521 | 332 | 421 | 752 | 0 |
| GT032792 | 325 | 421 | 745 | 0 |
| GT033883 | 334 | 309 | 642 | 0 |
| JG911986 | 282 | 418 | 699 | 0 |
| GT051618 | 331 | 448 | 776 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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