| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00002381m |
| Family | GH17 |
| Protein Properties | Length: 406 Molecular Weight: 42625.9 Isoelectric Point: 7 |
| Chromosome | Chromosome/Scaffold: 010755 Start: 3856 End: 7162 |
| Description | Glycosyl hydrolase superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH17 | 53 | 370 | 0 |
| IGVNYGQIANNLPSPARVSWLLRSMRISKVKLYDADPNVLRAFLGTGVDFVVGIGNEAVPAMVSPAAAQAWLQQHLVPHLRAGARVTCVTVGNEVFKGND TALQAAVLPAMESVHRALGALGLQGRVNVTTAHSLDIMGVSFPPSAGAFSPAALPHLRPFLGFLSATRAPFLINCYPYFAYRDDPARVPLEYALLQPNAA GVADPHTGLRYDNMLYAQVDAVYAAIQALGHTDVEVVVSETGWPSRGDPDEPGATPENAGTYVRNLLQRIEAGQGTPLRPAAPVGVFVFALFNENLKPGP ASERNYGLFYPDGTPVYN | |||
| Full Sequence |
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| Protein Sequence Length: 406 Download |
| MAAAAGAGRP SITALPTPPA PLPSSKLVTA CFFALLLPIL LTGEVAVAEA LSIGVNYGQI 60 ANNLPSPARV SWLLRSMRIS KVKLYDADPN VLRAFLGTGV DFVVGIGNEA VPAMVSPAAA 120 QAWLQQHLVP HLRAGARVTC VTVGNEVFKG NDTALQAAVL PAMESVHRAL GALGLQGRVN 180 VTTAHSLDIM GVSFPPSAGA FSPAALPHLR PFLGFLSATR APFLINCYPY FAYRDDPARV 240 PLEYALLQPN AAGVADPHTG LRYDNMLYAQ VDAVYAAIQA LGHTDVEVVV SETGWPSRGD 300 PDEPGATPEN AGTYVRNLLQ RIEAGQGTPL RPAAPVGVFV FALFNENLKP GPASERNYGL 360 FYPDGTPVYN AGVHGYLPPM FAVSNAARQV ASHCSALLQA LFSNC* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 4.0e-7 | 80 | 364 | 295 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam00332 | Glyco_hydro_17 | 6.0e-92 | 53 | 370 | 319 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAH67163.1 | 0 | 21 | 392 | 13 | 378 | H0717B12.10 [Oryza sativa (indica cultivar-group)] |
| GenBank | EAY86149.1 | 0 | 47 | 390 | 33 | 374 | hypothetical protein OsI_07522 [Oryza sativa Indica Group] |
| RefSeq | NP_001047027.1 | 0 | 47 | 390 | 33 | 374 | Os02g0532900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001052739.1 | 0 | 21 | 392 | 13 | 378 | Os04g0412300 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002452203.1 | 0 | 5 | 390 | 2 | 392 | hypothetical protein SORBIDRAFT_04g021700 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3ur8_B | 0 | 53 | 369 | 3 | 310 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur8_A | 0 | 53 | 369 | 3 | 310 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur7_B | 0 | 53 | 369 | 3 | 310 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 3ur7_A | 0 | 53 | 369 | 3 | 310 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 2cyg_A | 0 | 53 | 369 | 1 | 308 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| FL868660 | 249 | 4 | 252 | 0 |
| FL859291 | 242 | 35 | 276 | 0 |
| FL917710 | 218 | 53 | 270 | 0 |
| HO825834 | 374 | 35 | 401 | 0 |
| FL917710 | 35 | 271 | 305 | 1.3 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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