Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00002396m |
Family | CBM43 |
Protein Properties | Length: 179 Molecular Weight: 17129.1 Isoelectric Point: 4.4369 |
Chromosome | Chromosome/Scaffold: 010220 Start: 6555 End: 10401 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 24 | 104 | 7.3e-29 |
CVCRPDQPTTAQQKVIDFSCGDGADCSSILQGGGCYNPNTVAAHCSWAANSYYQNNKAKGATCDFGGAAAISTTDPSFSGC |
Full Sequence |
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Protein Sequence Length: 179 Download |
MATALALAAA VLLLSSTLAA SEFCVCRPDQ PTTAQQKVID FSCGDGADCS SILQGGGCYN 60 PNTVAAHCSW AANSYYQNNK AKGATCDFGG AAAISTTDPS FSGCTFPSTA SASGTTGTTT 120 VGGATSTGTL SPGVGTGFNG TAVGSGGLGP AGTMDSAAAG LLPGTFLAAA ILSLLALH* 180 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 1.0e-16 | 24 | 92 | 74 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-31 | 23 | 106 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAZ04609.1 | 5.60519e-45 | 5 | 113 | 1 | 109 | hypothetical protein OsI_26758 [Oryza sativa Indica Group] |
RefSeq | NP_001050386.1 | 0 | 22 | 177 | 24 | 187 | Os03g0421800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001147226.1 | 0 | 17 | 160 | 18 | 173 | glucan endo-1,3-beta-glucosidase 4 [Zea mays] |
RefSeq | NP_001149846.1 | 9.80909e-45 | 18 | 106 | 21 | 111 | LOC100283474 [Zea mays] |
RefSeq | XP_002465118.1 | 0 | 15 | 178 | 18 | 194 | hypothetical protein SORBIDRAFT_01g032330 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 7e-16 | 19 | 108 | 9 | 98 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |