| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00002424m |
| Family | GT5 |
| Protein Properties | Length: 726 Molecular Weight: 82135.1 Isoelectric Point: 6.9137 |
| Chromosome | Chromosome/Scaffold: 010584 Start: 2112 End: 9194 |
| Description | UDP-Glycosyltransferase superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT5 | 246 | 644 | 0 |
| HVVHICSELEPIASCGSLSTYVAGVSCAVQGKGNLVEVIMPKYTSINTDGIHGLRKAEAEYESYFGGIWHKNRIWIGTSSGVGLILIEPTQLTYFNRDML RGYPDDFERFSYFSRASLDYIVKSGKKPDVLHIHNWETAIVAPLFWDIFAHQGLENTRILLTCQDLDSQCLEEPNKLEMCGLDPRKLHRADRLQDPNETH LVNILKGGIVYSNKVVLMSSIHSKDVITRGLRHGLEATLTVHKEKILVASHGLDGELWDPSKDIYLPRRYSADDIEGKSVCREALKRRLGFHSGSSIIVG CICDGYSDIHNLKEAVHVALRRSAQVIFMEKLGSVVNSTIRALKEEFIDLDDSIAFIEEYDETLPHLVYAGSDIILCSSFEDPSLQIAMKAIKYGCAPI | |||
| Full Sequence |
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| Protein Sequence Length: 726 Download |
| METTRLVVGA AMRAPPTPQL RRRRLPHPRG GVHCLPFARA ARPALLTRCS YSRKGNSNSR 60 GKAPRESSGT VRLDVEESSD QGTKLANDQR KGDIRELFIQ AQRNILYLNK QRLLATEELK 120 KLQDENELLL QEIEVLEMEV QGVPLEALQS SRFCELLLRI DTMVISGMIN MQEASDLREK 180 VVNNRNIIQS TFSDIHHKAN TELLSELRLF LRKPIEYATL YLCPNCYSYC LSFKDSTIQL 240 HVKPLHVVHI CSELEPIASC GSLSTYVAGV SCAVQGKGNL VEVIMPKYTS INTDGIHGLR 300 KAEAEYESYF GGIWHKNRIW IGTSSGVGLI LIEPTQLTYF NRDMLRGYPD DFERFSYFSR 360 ASLDYIVKSG KKPDVLHIHN WETAIVAPLF WDIFAHQGLE NTRILLTCQD LDSQCLEEPN 420 KLEMCGLDPR KLHRADRLQD PNETHLVNIL KGGIVYSNKV VLMSSIHSKD VITRGLRHGL 480 EATLTVHKEK ILVASHGLDG ELWDPSKDIY LPRRYSADDI EGKSVCREAL KRRLGFHSGS 540 SIIVGCICDG YSDIHNLKEA VHVALRRSAQ VIFMEKLGSV VNSTIRALKE EFIDLDDSIA 600 FIEEYDETLP HLVYAGSDII LCSSFEDPSL QIAMKAIKYG CAPIQINFPS DESRQSEGND 660 CRNRVMSKYI ISTYGELSLL QALDNFKNDP SLWVQRIKDG MIKGLAWDAE CYDLHWEAYS 720 FIRKL* 780 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02939 | PLN02939 | 4.0e-6 | 66 | 202 | 156 | + transferase, transferring glycosyl groups | ||
| PRK00654 | glgA | 1.0e-61 | 245 | 644 | 416 | + glycogen synthase; Provisional | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 6.0e-69 | 246 | 644 | 415 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| TIGR02095 | glgA | 2.0e-71 | 245 | 712 | 490 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| PLN02939 | PLN02939 | 1.0e-97 | 114 | 709 | 625 | + transferase, transferring glycosyl groups | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK98690.1 | 0 | 1 | 725 | 1 | 720 | AC069158_2 Putative starch synthase [Oryza sativa Japonica Group] |
| GenBank | ACC78131.1 | 0 | 1 | 725 | 1 | 700 | starch synthase V precursor [Oryza sativa] |
| GenBank | EEC74203.1 | 0 | 35 | 725 | 33 | 697 | hypothetical protein OsI_09361 [Oryza sativa Indica Group] |
| RefSeq | NP_001048453.1 | 0 | 324 | 725 | 4 | 403 | Os02g0807100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001123603.1 | 0 | 1 | 725 | 1 | 701 | starch synthase V [Zea mays] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3guh_A | 6e-23 | 245 | 707 | 1 | 462 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
| PDB | 2r4u_A | 6e-23 | 245 | 707 | 1 | 462 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
| PDB | 2r4t_A | 6e-23 | 245 | 707 | 1 | 462 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
| PDB | 2qzs_A | 6e-23 | 245 | 707 | 1 | 462 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| PDB | 3cx4_A | 2e-22 | 245 | 707 | 1 | 462 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| JG919461 | 160 | 380 | 539 | 0 |
| JG919461 | 120 | 540 | 658 | 0 |
| JG919461 | 9 | 372 | 380 | 0 |
| EL455989 | 341 | 188 | 527 | 0 |
| FL961900 | 184 | 543 | 726 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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