Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00002452m |
Family | CBM43 |
Protein Properties | Length: 485 Molecular Weight: 50506.3 Isoelectric Point: 8.2931 |
Chromosome | Chromosome/Scaffold: 010295 Start: 7817 End: 11455 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 396 | 478 | 6.7e-33 |
WCVANAMVGEQRLQAALNYACGEGGADCKAIQPGAACFEPNTMVAHASYAFNDYYQRKGRSIGTCDFAGAAYVVNQAPKVGKC | |||
GH17 | 31 | 352 | 0 |
VGVNYGRVANNLPNPAAVVQLLKQQGITQVKLYDADPTVLRALANTGIKVVVALPNEQLAAAASRASYALLWVRRNVAAYYPATQIQGIAVGNEVFATAK NVTAQLVPAMVNVHAALARLNLDKSVKVSSPIALVALATSYPSSAGAFREDLAQPVMKPMLDFLAQTGSYLMVNAYPFFAYSGNARDISLDYALFRPNDG VLDTGNGLKYYSLLDAQLDAVFAAVSRLGNYNGVRVVVSETGWPSKGDANEVGASAANAAAYNGNLARRVLSGNAGTPLRPDADIDVYLFALFNENQKPG PTSERNYGVFYPNQQKVYDVEF |
Full Sequence |
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Protein Sequence Length: 485 Download |
MALPRRALLV AGLLAAALPL LLLRPAEAGT VGVNYGRVAN NLPNPAAVVQ LLKQQGITQV 60 KLYDADPTVL RALANTGIKV VVALPNEQLA AAASRASYAL LWVRRNVAAY YPATQIQGIA 120 VGNEVFATAK NVTAQLVPAM VNVHAALARL NLDKSVKVSS PIALVALATS YPSSAGAFRE 180 DLAQPVMKPM LDFLAQTGSY LMVNAYPFFA YSGNARDISL DYALFRPNDG VLDTGNGLKY 240 YSLLDAQLDA VFAAVSRLGN YNGVRVVVSE TGWPSKGDAN EVGASAANAA AYNGNLARRV 300 LSGNAGTPLR PDADIDVYLF ALFNENQKPG PTSERNYGVF YPNQQKVYDV EFVLGGGGAA 360 GGGSQGGGGG LGWQENGGPT SGNPPSGVKV TTGEAWCVAN AMVGEQRLQA ALNYACGEGG 420 ADCKAIQPGA ACFEPNTMVA HASYAFNDYY QRKGRSIGTC DFAGAAYVVN QAPKVGKCDL 480 PSTV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 0.0005 | 50 | 343 | 301 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 3.0e-22 | 396 | 467 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-37 | 396 | 478 | 83 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 1.0e-95 | 31 | 352 | 322 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACF79018.1 | 0 | 25 | 484 | 23 | 481 | unknown [Zea mays] |
GenBank | ACF88240.1 | 0 | 21 | 484 | 19 | 481 | unknown [Zea mays] |
RefSeq | NP_001048260.1 | 0 | 1 | 484 | 1 | 488 | Os02g0771700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001136613.1 | 0 | 21 | 484 | 19 | 481 | hypothetical protein LOC100216736 [Zea mays] |
RefSeq | XP_002454630.1 | 0 | 6 | 484 | 5 | 491 | hypothetical protein SORBIDRAFT_04g034530 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 31 | 352 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1ghs_B | 0 | 31 | 352 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghs_A | 0 | 31 | 352 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3f55_D | 0 | 31 | 352 | 2 | 315 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3f55_C | 0 | 31 | 352 | 2 | 315 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |