| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00002722m |
| Family | PL1 |
| Protein Properties | Length: 257 Molecular Weight: 27280.7 Isoelectric Point: 4.9411 |
| Chromosome | Chromosome/Scaffold: 034059 Start: 3542 End: 4405 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 79 | 256 | 2.59941e-42 |
| WITFARDMTIRPKEELVVSSHKTVDGRGAAVVVGDGGAAVVVGDGGACFVLHNMSHVIIHGLAVRDCKPARTPLASSSLPAGGGLSDGDGITVFRSTDVW VDHCTLEACTDGLIDVTDASTRVTLSNNLLRNHDKAMLLGHSDNFPDDKDMKVTVPFNRFGPGLVQRMPSMCRFGLFH | |||
| Full Sequence |
|---|
| Protein Sequence Length: 257 Download |
| MLADDDCGTG NPVDDCWRCD PSWADNRQRL ADCAIGFGRD AGGGKNGKTY VVTDPSDEDP 60 AAPAPGTLRY GLVQEEPLWI TFARDMTIRP KEELVVSSHK TVDGRGAAVV VGDGGAAVVV 120 GDGGACFVLH NMSHVIIHGL AVRDCKPART PLASSSLPAG GGLSDGDGIT VFRSTDVWVD 180 HCTLEACTDG LIDVTDASTR VTLSNNLLRN HDKAMLLGHS DNFPDDKDMK VTVPFNRFGP 240 GLVQRMPSMC RFGLFH* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 4.0e-17 | 174 | 256 | 92 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-31 | 128 | 256 | 137 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 4.0e-36 | 126 | 256 | 140 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABO28477.1 | 0 | 7 | 256 | 54 | 294 | pectate lyase precursor [Glycine max] |
| GenBank | ABV32549.1 | 0 | 7 | 256 | 61 | 301 | pectase lyase [Prunus persica] |
| GenBank | ACK38190.1 | 0 | 7 | 256 | 52 | 292 | unknown [Medicago truncatula] |
| GenBank | EAY97390.1 | 0 | 6 | 256 | 36 | 265 | hypothetical protein OsI_19315 [Oryza sativa Indica Group] |
| RefSeq | NP_001055106.1 | 0 | 6 | 256 | 36 | 265 | Os05g0293500 [Oryza sativa (japonica cultivar-group)] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 11 | 256 | 2 | 239 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 11 | 256 | 2 | 239 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 0.0000000000002 | 86 | 256 | 56 | 207 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 3krg_A | 0.0000000000005 | 91 | 256 | 106 | 289 | A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase |
| PDB | 1bn8_A | 0.000000000002 | 91 | 256 | 127 | 310 | A Chain A, Bacillus Subtilis Pectate Lyase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
 | ||||
| Hit | Length | Start | End | EValue |
| FL903995 | 207 | 1 | 207 | 0 |
| JG725297 | 252 | 7 | 256 | 0 |
| DY282868 | 252 | 7 | 256 | 0 |
| CO072740 | 252 | 7 | 256 | 0 |
| FC905578 | 251 | 7 | 255 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
| Phylogeny |
|---|
 |