| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00002856m |
| Family | GT47 |
| Protein Properties | Length: 482 Molecular Weight: 53793.9 Isoelectric Point: 8.7099 |
| Chromosome | Chromosome/Scaffold: 034152 Start: 806 End: 4741 |
| Description | Exostosin family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT47 | 113 | 422 | 0 |
| LRVYVYEMPSKFTYDLLRRFRDSYHKTENLTSNGSPVHRLIEQHSIDYWLWADLMAPESQRLLKSVVRVQRQEEADIFYVPFFTTISYFLLEKQECKALY REALKWVTDQPAWQRSEGRDHVIPVHHPWSFKSVRRFIKKAIWLLPDMDSTGNWYKPGQVYLEKDVILPYVPNVDHCDSKCVSETQSKRSILLFFRGRLK RNAGGKIRSKLVEELKSAEDIVIEEGSAGAQGKAAAQDGMRKSLFCLSPAGDTPSSARLFDAIVSGCIPVIISDELELPFEGILDYREIALFVSSSDALQ PGWLVKYLRR | |||
| Full Sequence |
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| Protein Sequence Length: 482 Download |
| MAGKQFPSLA HARPASASAS SRRLLAAAGA LVLLSAVYFL LLSPSSPRPA DAVLASHTPT 60 TSSFLASLES FLAAPHPSDS AAAPGDLDAA IRAQEEARLL GDPAWPAPAA GPLRVYVYEM 120 PSKFTYDLLR RFRDSYHKTE NLTSNGSPVH RLIEQHSIDY WLWADLMAPE SQRLLKSVVR 180 VQRQEEADIF YVPFFTTISY FLLEKQECKA LYREALKWVT DQPAWQRSEG RDHVIPVHHP 240 WSFKSVRRFI KKAIWLLPDM DSTGNWYKPG QVYLEKDVIL PYVPNVDHCD SKCVSETQSK 300 RSILLFFRGR LKRNAGGKIR SKLVEELKSA EDIVIEEGSA GAQGKAAAQD GMRKSLFCLS 360 PAGDTPSSAR LFDAIVSGCI PVIISDELEL PFEGILDYRE IALFVSSSDA LQPGWLVKYL 420 RRMDAKRIRE MQSNLVKFSK HFLYSSPARS LGPEDLTWRM VISLTLLIFL AVASMDTCIM 480 K* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam03016 | Exostosin | 1.0e-69 | 113 | 423 | 319 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016020 | membrane |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAF06505.2 | 0 | 62 | 472 | 62 | 472 | Os01g0811400 [Oryza sativa Japonica Group] |
| GenBank | EAY76230.1 | 0 | 62 | 472 | 63 | 473 | hypothetical protein OsI_04166 [Oryza sativa Indica Group] |
| RefSeq | NP_001044591.1 | 0 | 62 | 472 | 62 | 472 | Os01g0811400 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001141657.1 | 0 | 1 | 472 | 1 | 470 | hypothetical protein LOC100273782 [Zea mays] |
| RefSeq | XP_002458661.1 | 0 | 1 | 472 | 1 | 472 | hypothetical protein SORBIDRAFT_03g037670 [Sorghum bicolor] |
