Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00003370m |
Family | GH17 |
Protein Properties | Length: 423 Molecular Weight: 43444.5 Isoelectric Point: 9.115 |
Chromosome | Chromosome/Scaffold: 031407 Start: 5085 End: 6763 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH17 | 26 | 344 | 0 |
LGVNYGQVADNLPPPQAAAVLLRAVNATRVKLYDADSRVLSAFAGSGADFTVGLPDHLVPRLAADPSAASAWVRANIMPHLPATSITAVTVGNEVLTGTD TTMLRSLLPAMEALHAALTACNLTSRVAVTTAHSLAVLSSSFPPSAAAFRRDVLPYMSPLLGFLAKTGAPFLINAYPYFAYKADPGRVDLSYVLFEPNAG VSDAATGLRYDNMLHAQVDAVRAAICRANYGKAVEIRVSETGWPSQGDEDEAGATPENAARYNGNLMRLVAQGKGTPAAPGKPLQVYVFALFNEDQKPGP ASERHYGLFKPDGTPAYDV |
Full Sequence |
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Protein Sequence Length: 423 Download |
MALRLVLAAA FAVLAPAMAA AGAPALGVNY GQVADNLPPP QAAAVLLRAV NATRVKLYDA 60 DSRVLSAFAG SGADFTVGLP DHLVPRLAAD PSAASAWVRA NIMPHLPATS ITAVTVGNEV 120 LTGTDTTMLR SLLPAMEALH AALTACNLTS RVAVTTAHSL AVLSSSFPPS AAAFRRDVLP 180 YMSPLLGFLA KTGAPFLINA YPYFAYKADP GRVDLSYVLF EPNAGVSDAA TGLRYDNMLH 240 AQVDAVRAAI CRANYGKAVE IRVSETGWPS QGDEDEAGAT PENAARYNGN LMRLVAQGKG 300 TPAAPGKPLQ VYVFALFNED QKPGPASERH YGLFKPDGTP AYDVGVRAPT ISGWKGSGNG 360 TGGGAGLVVA QGPGGADGVG PGTGYYTVSA AANKVKRRRR GVESLLAAAV VAMASGLGWS 420 WS* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
COG5309 | COG5309 | 5.0e-5 | 55 | 337 | 292 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] |
pfam00332 | Glyco_hydro_17 | 6.0e-93 | 28 | 344 | 317 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAQ06269.1 | 0 | 29 | 417 | 29 | 421 | putative beta-1,3-glucanase [Pennisetum glaucum] |
DDBJ | BAD67672.1 | 0 | 29 | 420 | 30 | 423 | putative beta-1,3-glucanase precursor [Oryza sativa Japonica Group] |
DDBJ | BAD67673.1 | 0 | 29 | 395 | 30 | 399 | putative beta-1,3-glucanase precursor [Oryza sativa Japonica Group] |
RefSeq | NP_001056696.1 | 0 | 29 | 420 | 56 | 449 | Os06g0131500 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002437759.1 | 0 | 24 | 404 | 30 | 416 | hypothetical protein SORBIDRAFT_10g002130 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 26 | 344 | 1 | 310 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur8_B | 0 | 26 | 346 | 3 | 314 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur8_A | 0 | 26 | 346 | 3 | 314 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur7_B | 0 | 26 | 346 | 3 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 0 | 26 | 346 | 3 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |