| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00003946m |
| Family | CE8 |
| Protein Properties | Length: 209 Molecular Weight: 22901.6 Isoelectric Point: 7.3768 |
| Chromosome | Chromosome/Scaffold: 0318623 Start: 502 End: 1371 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CE8 | 1 | 193 | 0 |
| HQAVALRVGADLSAFYRCSFVGYQDTLYTHSLRQFFRDCDIYGTIDFVFGNAAVVLQSCNLYARRPLPKQSNIFTAQGREDPNQNTGISVHRCKVAAAAD LAGREASTRTYLGRPWKQYSRTVFLQSELDSLIDPAGWLEWSGDFALDTLYYGEYMNTGAGAGTSGRVKWKGYRVITSAAEASAFTVGSFIDG | |||
| Full Sequence |
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| Protein Sequence Length: 209 Download |
| HQAVALRVGA DLSAFYRCSF VGYQDTLYTH SLRQFFRDCD IYGTIDFVFG NAAVVLQSCN 60 LYARRPLPKQ SNIFTAQGRE DPNQNTGISV HRCKVAAAAD LAGREASTRT YLGRPWKQYS 120 RTVFLQSELD SLIDPAGWLE WSGDFALDTL YYGEYMNTGA GAGTSGRVKW KGYRVITSAA 180 EASAFTVGSF IDGDVWLAGT SIPFNTGL* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02484 | PLN02484 | 9.0e-110 | 1 | 208 | 208 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 4.0e-111 | 1 | 208 | 208 | + pectinesterase/pectinesterase inhibitor | ||
| PLN03043 | PLN03043 | 6.0e-113 | 1 | 208 | 208 | + Probable pectinesterase/pectinesterase inhibitor; Provisional | ||
| PLN02713 | PLN02713 | 6.0e-122 | 1 | 208 | 208 | + Probable pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 6.0e-135 | 1 | 194 | 194 | + Pectinesterase. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAN84553.1 | 0 | 1 | 208 | 19 | 226 | methyl pectinesterase [Lolium perenne] |
| GenBank | EEC70505.1 | 0 | 1 | 208 | 358 | 565 | hypothetical protein OsI_01594 [Oryza sativa Indica Group] |
| RefSeq | NP_001042866.1 | 0 | 1 | 208 | 219 | 426 | Os01g0312500 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001146685.1 | 0 | 1 | 208 | 356 | 563 | hypothetical protein LOC100280285 [Zea mays] |
| RefSeq | XP_002455538.1 | 0 | 1 | 208 | 369 | 576 | hypothetical protein SORBIDRAFT_03g012830 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 1 | 208 | 112 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 2 | 208 | 109 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1qjv_B | 2e-18 | 2 | 182 | 129 | 326 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 2e-18 | 2 | 182 | 129 | 326 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 3e-18 | 2 | 182 | 129 | 326 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EC872177 | 209 | 1 | 209 | 0 |
| EE289265 | 209 | 1 | 209 | 0 |
| HO188466 | 209 | 1 | 209 | 0 |
| DY386337 | 204 | 1 | 204 | 0 |
| DY360756 | 208 | 1 | 208 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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