Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00004155m |
Family | GT47 |
Protein Properties | Length: 556 Molecular Weight: 61685.4 Isoelectric Point: 8.4031 |
Chromosome | Chromosome/Scaffold: 038648 Start: 3580 End: 6569 |
Description | Exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 111 | 459 | 0 |
CRGRYVYVHDLPPRFNADIIRDCRKYEDHWGDMCGVISNAGLGRPLVDRADGVITSEAGWYGTHQFALDAIFHNRMKQYKCLTNHSAMANAVFVPFYAGF DFARYHWGYDNATRDATFVDLAQWLMARPQWRQMWGRDHFLVAGRTGCDFRRSNNVDPDWGNDLLAMPAGRNMSVLVLESTLLHGSDYSVPYPTYFHPRS DADVLRWQDQVRGQRRAWLMAFVGAPRPDTPVNIRVRDHVIAQCKASSACAMLGCARSPGSPQCHAPGDIMRLFQKTSFCLQPPGDSCTRRSVFDSMVAV CIPVFFHTATAYKQYRWHLPEDHLNYSVYIPVADVRLRNVSIEAVLRAI |
Full Sequence |
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Protein Sequence Length: 556 Download |
MGQADPATGD PNGGKGATTL HSDMQLSVGV ANFIAQLLSK SAAKGGGAQW RRAGGAKGAE 60 KAAANALPPL QLLAILAVIA WTLFLYVQFS VLSAAVEVVD VSDGADSADP CRGRYVYVHD 120 LPPRFNADII RDCRKYEDHW GDMCGVISNA GLGRPLVDRA DGVITSEAGW YGTHQFALDA 180 IFHNRMKQYK CLTNHSAMAN AVFVPFYAGF DFARYHWGYD NATRDATFVD LAQWLMARPQ 240 WRQMWGRDHF LVAGRTGCDF RRSNNVDPDW GNDLLAMPAG RNMSVLVLES TLLHGSDYSV 300 PYPTYFHPRS DADVLRWQDQ VRGQRRAWLM AFVGAPRPDT PVNIRVRDHV IAQCKASSAC 360 AMLGCARSPG SPQCHAPGDI MRLFQKTSFC LQPPGDSCTR RSVFDSMVAV CIPVFFHTAT 420 AYKQYRWHLP EDHLNYSVYI PVADVRLRNV SIEAVLRAIP PATVERMREE VIKLIPRVLY 480 ADPRSRLETI KDAVDIAVEG VLDTVARIKK GEYVDSGRPV SEDPPYLYAS TESRFRPKSV 540 VSRIMTRLKQ WIEGS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 2.0e-58 | 110 | 459 | 361 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAO17347.1 | 0 | 15 | 511 | 124 | 625 | Hypothetical protein [Oryza sativa Japonica Group] |
RefSeq | NP_001048943.1 | 0 | 24 | 511 | 1 | 481 | Os03g0144300 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002465869.1 | 0 | 34 | 535 | 15 | 515 | hypothetical protein SORBIDRAFT_01g047310 [Sorghum bicolor] |
RefSeq | XP_002468519.1 | 0 | 60 | 541 | 2 | 482 | hypothetical protein SORBIDRAFT_01g047290 [Sorghum bicolor] |
RefSeq | XP_002468520.1 | 0 | 61 | 538 | 7 | 473 | hypothetical protein SORBIDRAFT_01g047300 [Sorghum bicolor] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CJ833920 | 238 | 246 | 482 | 0 |
EL456596 | 274 | 159 | 432 | 0 |
JG636298 | 268 | 185 | 452 | 0 |
GR934411 | 275 | 110 | 384 | 0 |
CX076275 | 265 | 188 | 452 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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