Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00004220m |
Family | GH28 |
Protein Properties | Length: 454 Molecular Weight: 48935.4 Isoelectric Point: 6.8261 |
Chromosome | Chromosome/Scaffold: 038585 Start: 652 End: 4672 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 71 | 417 | 0 |
ADKGGAQLYVPKGRWLTGSFNLTSHLTLYLEKDAVIVGSKESSQWPIVEPLPSYGQGLDLPGPRHRSLINGYNLTDVVITGNIGVIDGQGSVWWQWLRSH KLNHSRPHLVEFLHSEEIVISNLTFLNSPAWSIHPVYCSNVKVHNVTIETSLDAPRTDGIVPDSCSNLCIEDSTVSVSHDAISLKSGWDKYGISFGRPTS DIHINRVNLLSSSGAALSFGSEMSGGISDIHVNHLRIRDSYKGISFKTSPGRGGYIKQVAISDVRMEDVHVGIEFTGNCSSHPDHSFDPSQLPVINQITL KNLVGTNISVAGVLSGIDGAPFTAICLSNLNFSMAADSASWSCSKVA |
Full Sequence |
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Protein Sequence Length: 454 Download |
MKGLVVVLAL LLAAALGWAR GELELRRLRD QAPPGSRPHS VTITEFGAVG DGKTLNTVPF 60 QNAVFYVRSF ADKGGAQLYV PKGRWLTGSF NLTSHLTLYL EKDAVIVGSK ESSQWPIVEP 120 LPSYGQGLDL PGPRHRSLIN GYNLTDVVIT GNIGVIDGQG SVWWQWLRSH KLNHSRPHLV 180 EFLHSEEIVI SNLTFLNSPA WSIHPVYCSN VKVHNVTIET SLDAPRTDGI VPDSCSNLCI 240 EDSTVSVSHD AISLKSGWDK YGISFGRPTS DIHINRVNLL SSSGAALSFG SEMSGGISDI 300 HVNHLRIRDS YKGISFKTSP GRGGYIKQVA ISDVRMEDVH VGIEFTGNCS SHPDHSFDPS 360 QLPVINQITL KNLVGTNISV AGVLSGIDGA PFTAICLSNL NFSMAADSAS WSCSKVAGYS 420 EMVFPEPCSE LRDPSSSSSI CFSLSRYSAI AIA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 1.0e-16 | 35 | 428 | 412 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 5.0e-20 | 39 | 425 | 408 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 5.0e-21 | 132 | 416 | 299 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-23 | 38 | 401 | 373 | + polygalacturonase ADPG | ||
COG5434 | PGU1 | 4.0e-43 | 41 | 341 | 324 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC68574.1 | 0 | 34 | 452 | 28 | 448 | hypothetical protein OsI_36908 [Oryza sativa Indica Group] |
RefSeq | NP_001066993.1 | 0 | 34 | 453 | 3 | 424 | Os12g0554800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001068399.1 | 0 | 34 | 452 | 28 | 448 | Os11g0658800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001130359.1 | 0 | 24 | 453 | 28 | 458 | hypothetical protein LOC100191454 [Zea mays] |
RefSeq | XP_002451220.1 | 0 | 19 | 453 | 17 | 448 | hypothetical protein SORBIDRAFT_05g025980 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 3e-34 | 39 | 399 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 3e-34 | 39 | 399 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 3e-34 | 39 | 399 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 3e-34 | 39 | 399 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.0000000000002 | 85 | 339 | 52 | 304 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |