Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00004591m |
Family | AA1 |
Protein Properties | Length: 465 Molecular Weight: 51229.1 Isoelectric Point: 9.5838 |
Chromosome | Chromosome/Scaffold: 0181323 Start: 467 End: 2384 |
Description | SKU5 similar 18 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA1 | 2 | 415 | 0 |
GLQMRRNSWNDGVAGTNCAIPPGENWTYVFQAKDEVGSFFYRPSLGLHAAAGGHGPIRVNSRPVIAVPFAQPDGEFDVLIGDWYNMDVKEMRGYLDRGRD LPSPDGILINGLGPYAADFTFKPGRTYRLRVSNVGTRTSLSFRIQGHKLLLVEAEGTYTLQKHYASLDVHPGQSLSVLVAADQTPRPSYYMVVSSLFVEP KLFGVASVLYAGSGGPQPPGAAPLEDLSSHNGYNRSMEQARTVRMNLTCGAARPNQQGSFRYGLITVSRTLLLRNGEAEIGGRRRCTVNSVSFAGAATPL KLADHFDVAGVFTVVPGRPEKRRPSLGTAVIDARYRDFVQIVFENRLPSLQTWHLDGYSFFVAGMGWGKWSPDARSTYNLVDAIYRSTVQVYPSAWTAVL VSLDNEGMWNLRSQ |
Full Sequence |
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Protein Sequence Length: 465 Download |
NGLQMRRNSW NDGVAGTNCA IPPGENWTYV FQAKDEVGSF FYRPSLGLHA AAGGHGPIRV 60 NSRPVIAVPF AQPDGEFDVL IGDWYNMDVK EMRGYLDRGR DLPSPDGILI NGLGPYAADF 120 TFKPGRTYRL RVSNVGTRTS LSFRIQGHKL LLVEAEGTYT LQKHYASLDV HPGQSLSVLV 180 AADQTPRPSY YMVVSSLFVE PKLFGVASVL YAGSGGPQPP GAAPLEDLSS HNGYNRSMEQ 240 ARTVRMNLTC GAARPNQQGS FRYGLITVSR TLLLRNGEAE IGGRRRCTVN SVSFAGAATP 300 LKLADHFDVA GVFTVVPGRP EKRRPSLGTA VIDARYRDFV QIVFENRLPS LQTWHLDGYS 360 FFVAGMGWGK WSPDARSTYN LVDAIYRSTV QVYPSAWTAV LVSLDNEGMW NLRSQSLDRR 420 YLGQEIYMRV SQGSSEVPDP RDELPMPPNA LLCGKAKSWK IRRA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02991 | PLN02991 | 4.0e-154 | 1 | 458 | 460 | + oxidoreductase | ||
PLN02792 | PLN02792 | 5.0e-155 | 1 | 458 | 465 | + oxidoreductase | ||
PLN02835 | PLN02835 | 1.0e-161 | 1 | 456 | 458 | + oxidoreductase | ||
PLN02354 | PLN02354 | 4.0e-165 | 1 | 457 | 467 | + copper ion binding / oxidoreductase | ||
PLN02168 | PLN02168 | 0 | 1 | 455 | 466 | + copper ion binding / pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005507 | copper ion binding |
GO:0016491 | oxidoreductase activity |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_177707.1 | 0 | 1 | 457 | 84 | 545 | sks18 (SKU5 Similar 18); copper ion binding / pectinesterase [Arabidopsis thaliana] |
RefSeq | XP_002282214.1 | 0 | 1 | 462 | 85 | 540 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002300700.1 | 0 | 1 | 455 | 79 | 537 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002306213.1 | 0 | 1 | 462 | 87 | 541 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002528421.1 | 0 | 1 | 462 | 87 | 542 | multicopper oxidase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1asq_B | 0 | 1 | 458 | 62 | 544 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1asq_A | 0 | 1 | 458 | 62 | 544 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1asp_B | 0 | 1 | 458 | 62 | 544 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1asp_A | 0 | 1 | 458 | 62 | 544 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1aso_B | 0 | 1 | 458 | 62 | 544 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO796073 | 472 | 1 | 454 | 0 |
HO801725 | 442 | 17 | 456 | 0 |
FL774064 | 187 | 279 | 465 | 0 |
DT338359 | 333 | 123 | 453 | 0 |
FL774064 | 20 | 279 | 298 | 0.066 |
Sequence Alignments (This image is cropped. Click for full image.) |
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