Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00004670m |
Family | GH10 |
Protein Properties | Length: 539 Molecular Weight: 60032.3 Isoelectric Point: 5.6779 |
Chromosome | Chromosome/Scaffold: 017531 Start: 355 End: 3815 |
Description | Glycosyl hydrolase family 10 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 188 | 468 | 0 |
TRDFPFGSAISRSIIGNRPYQEWFAKRFNAAVFENELKWYATEPAPGKEDYAAADELLRFVQSSDVVARGHNIFWEDPRYTPAWVKNLTGSQLRAAVAGR IGSLLSRYKGDFVHWDVSNELLHFDFYENRLGGNATAEFFDTARRADPLATLFLNDFNVVEACDDLSSSADSYAARLRQLADGGVTFEGIGLEGHFGKPN IPYVRAVLDKLGTLRLPIWLTEVDISSTFDQRTQAAYLEEVLREGFAHPAVDGMMLWTAMGANASCYQMCLTDANFTNLPA |
Full Sequence |
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Protein Sequence Length: 539 Download |
MYGDGGVRYD YRAYTECKPH PEPALYNGGV LRWASKITDF RTEDEGNYSP AFVLYNMSAA 60 MAYSFSCWVK IDGPASAHVK AKILTLENAA SQCIGTALVR NDCWSFLKGG FVLNSSSQTS 120 VLYFQTASPN ASTISIRSAS LQPFSPEQWN QHREDRIQLI RKRFVNVHVS DENGSRVVGA 180 KVAVRQITRD FPFGSAISRS IIGNRPYQEW FAKRFNAAVF ENELKWYATE PAPGKEDYAA 240 ADELLRFVQS SDVVARGHNI FWEDPRYTPA WVKNLTGSQL RAAVAGRIGS LLSRYKGDFV 300 HWDVSNELLH FDFYENRLGG NATAEFFDTA RRADPLATLF LNDFNVVEAC DDLSSSADSY 360 AARLRQLADG GVTFEGIGLE GHFGKPNIPY VRAVLDKLGT LRLPIWLTEV DISSTFDQRT 420 QAAYLEEVLR EGFAHPAVDG MMLWTAMGAN ASCYQMCLTD ANFTNLPAGD VVDRLLEEWQ 480 TREVLGATND RGSFNFSAFL GEYKLSVNYQ NFTAEGTFSL ARSDDTKHIN VRLLSGPA* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3693 | XynA | 3.0e-31 | 185 | 444 | 283 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 6.0e-51 | 190 | 444 | 271 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 1.0e-66 | 224 | 472 | 269 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC78941.1 | 0 | 32 | 533 | 21 | 522 | hypothetical protein OsI_19385 [Oryza sativa Indica Group] |
GenBank | EEE63172.1 | 0 | 32 | 533 | 21 | 522 | hypothetical protein OsJ_17981 [Oryza sativa Japonica Group] |
RefSeq | NP_001055145.1 | 0 | 68 | 533 | 11 | 476 | Os05g0304900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001152556.1 | 0 | 6 | 538 | 37 | 570 | hydrolase, hydrolyzing O-glycosyl compounds [Zea mays] |
RefSeq | XP_002446197.1 | 0 | 6 | 533 | 38 | 565 | hypothetical protein SORBIDRAFT_06g003350 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1v0n_A | 2e-26 | 193 | 444 | 16 | 266 | A Chain A, Characterization And Engineering Of The Bifunctional N- And O-glucosyltransferase Involved In Xenobiotic Metabolism In Plants |
PDB | 1v0m_A | 2e-26 | 193 | 444 | 16 | 266 | A Chain A, Characterization And Engineering Of The Bifunctional N- And O-glucosyltransferase Involved In Xenobiotic Metabolism In Plants |
PDB | 1v0l_A | 2e-26 | 193 | 444 | 16 | 266 | A Chain A, Characterization And Engineering Of The Bifunctional N- And O-glucosyltransferase Involved In Xenobiotic Metabolism In Plants |
PDB | 1v0k_A | 2e-26 | 193 | 444 | 16 | 266 | A Chain A, Characterization And Engineering Of The Bifunctional N- And O-glucosyltransferase Involved In Xenobiotic Metabolism In Plants |
PDB | 1od8_A | 2e-26 | 193 | 444 | 16 | 266 | A Chain A, Characterization And Engineering Of The Bifunctional N- And O-glucosyltransferase Involved In Xenobiotic Metabolism In Plants |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DV522212 | 262 | 70 | 331 | 0 |
DR965570 | 272 | 97 | 368 | 0 |
DR824406 | 221 | 6 | 226 | 0 |
FF353430 | 239 | 177 | 414 | 0 |
FL758005 | 208 | 332 | 539 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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