Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00004838m |
Family | GT47 |
Protein Properties | Length: 416 Molecular Weight: 47065.4 Isoelectric Point: 7.5629 |
Chromosome | Chromosome/Scaffold: 018084 Start: 5503 End: 8944 |
Description | Exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 48 | 343 | 0 |
RLKVYVYELPPKYNKNILAKDSRCLKHMFATEIFIHRFLLSSAVRTLNPEEADWFYTPVYTTCDLTPWGHPLTTKSPRMMRSAIQYISKRWPYWNRTEGA DHFFVTPHDFGACFYFQEAKAIERGVLPVLRRATLVQTFGQKHHVCLKEGSITIPPYTPPHKMRTHLIPPETPRSIFVYFRGLFYDTSNDPEGGYYARGA RASVWENFKNNPMFDISTDHPPTYYEDMQRSVFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGVFVAEDDVTKLDTILTSI |
Full Sequence |
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Protein Sequence Length: 416 Download |
MGTGRARALP LALALLLACS DVAVVAAQGT ERIQGSAGDV LEDDPVGRLK VYVYELPPKY 60 NKNILAKDSR CLKHMFATEI FIHRFLLSSA VRTLNPEEAD WFYTPVYTTC DLTPWGHPLT 120 TKSPRMMRSA IQYISKRWPY WNRTEGADHF FVTPHDFGAC FYFQEAKAIE RGVLPVLRRA 180 TLVQTFGQKH HVCLKEGSIT IPPYTPPHKM RTHLIPPETP RSIFVYFRGL FYDTSNDPEG 240 GYYARGARAS VWENFKNNPM FDISTDHPPT YYEDMQRSVF CLCPLGWAPW SPRLVEAVVF 300 GCIPVIIADD IVLPFADAIP WEEIGVFVAE DDVTKLDTIL TSIPMEEILR KQRLLANPSM 360 KQAMLFPQPA EPRDAFHQIL NGLARKLPHG KGVFLKPGQK VLNWTEGDPA DMKPW* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 4.0e-83 | 48 | 343 | 304 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACF87529.1 | 0 | 2 | 415 | 3 | 418 | unknown [Zea mays] |
GenBank | ACG31432.1 | 0 | 2 | 415 | 4 | 419 | secondary cell wall-related glycosyltransferase family 47 [Zea mays] |
GenBank | ACG36767.1 | 0 | 1 | 415 | 1 | 417 | secondary cell wall-related glycosyltransferase family 47 [Zea mays] |
RefSeq | NP_001147714.1 | 0 | 19 | 415 | 22 | 418 | secondary cell wall-related glycosyltransferase family 47 [Zea mays] |
RefSeq | XP_002440185.1 | 0 | 19 | 415 | 20 | 416 | hypothetical protein SORBIDRAFT_09g027450 [Sorghum bicolor] |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
xylogalacturonan biosynthesis | RXN-9589 | EC-2.4.2.41 | xylogalacturonan β-1,3-xylosyltransferase |