| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00004990m |
| Family | GT35 |
| Protein Properties | Length: 921 Molecular Weight: 104285 Isoelectric Point: 5.1186 |
| Chromosome | Chromosome/Scaffold: 017832 Start: 3008 End: 8565 |
| Description | Glycosyl transferase, family 35 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| GT35 | 97 | 438 | 0 |
| ALKQLGHNLEDVASQEPDAALGNGGLGRLASCFLDSLTTLNYPAWGYGLRYKYGLFKQLITKNGQEEVAENWLEMGYPWEIVRNDLSYPVKFYGKVVEGT DGRKHWIGGENIKAVPHDVPIPGYKTRVTNNLRLWSTTVPAQDFDLGAFNAGDHTKAYEAHLNAEKICHVLYPGDESPEGKVLRLKQQYTLCSASLQDIV YRFEGRAGDSLNWEDFPSKVAIQMNDTHPTLCIPELMRILIDFKGLSWDEAWRITERTVAYTNHTVLPEALEKWSLDIMQKLLPRHVEIIEKIDEELINN IVSKYGTADTALLKKKLKEMRILDNVDLPASIAQLFVKPKAK | |||
| GT35 | 515 | 914 | 0 |
| KLPRIVRMANLCVVGGHSVNGVAEIHSEIVKQDVFNSFYEMWPTKFQNKTNGVTPRRWIRFCNPELSTIISKWIGSDDWVLNTDKLAELKKFADNEDLHS EWRAAKLANKMKVVSLIRDKTGYIVSPDAMFDVQVKRIHEYKRQLLNILGIVYRYKKMKEMSAEERVKRFVPRVCIFGGKAFATYIQAKRIVKFITDVAA TVNHDSDIGDLLKVIFVPDYNVSVAEALIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIREEVGEENFFLFGAEAHEIVGLRKERAEG KFVPDPRFLEVKEFVRSGVFGTYNYDELMGSLEGNEGYGRADYFLVGKDFPSYIECQEKVDEAYRDQKLWTKMSILNTAGSSKFSSDRTIHEYAKDIWGI | |||
| Full Sequence |
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| Protein Sequence Length: 921 Download |
| LPSVLNSMDS SSIASNIEHY AEFKPFFAPE HLSPLNAYHA TAKSVFDALL INWNATYNYY 60 DKMNVKQAYY LSMEFLQGRA LTNAIGNLEL TGEYAEALKQ LGHNLEDVAS QEPDAALGNG 120 GLGRLASCFL DSLTTLNYPA WGYGLRYKYG LFKQLITKNG QEEVAENWLE MGYPWEIVRN 180 DLSYPVKFYG KVVEGTDGRK HWIGGENIKA VPHDVPIPGY KTRVTNNLRL WSTTVPAQDF 240 DLGAFNAGDH TKAYEAHLNA EKICHVLYPG DESPEGKVLR LKQQYTLCSA SLQDIVYRFE 300 GRAGDSLNWE DFPSKVAIQM NDTHPTLCIP ELMRILIDFK GLSWDEAWRI TERTVAYTNH 360 TVLPEALEKW SLDIMQKLLP RHVEIIEKID EELINNIVSK YGTADTALLK KKLKEMRILD 420 NVDLPASIAQ LFVKPKAKKK SPTKSKKKLL VKSLETIAEV EEKTKLEEEE AEVMSEIEEE 480 KIESEEVEAE ESEEVEAEEE DSEDGLDPFV KSDPKLPRIV RMANLCVVGG HSVNGVAEIH 540 SEIVKQDVFN SFYEMWPTKF QNKTNGVTPR RWIRFCNPEL STIISKWIGS DDWVLNTDKL 600 AELKKFADNE DLHSEWRAAK LANKMKVVSL IRDKTGYIVS PDAMFDVQVK RIHEYKRQLL 660 NILGIVYRYK KMKEMSAEER VKRFVPRVCI FGGKAFATYI QAKRIVKFIT DVAATVNHDS 720 DIGDLLKVIF VPDYNVSVAE ALIPASELSQ HISTAGMEAS GTSNMKFAMN GCILIGTLDG 780 ANVEIREEVG EENFFLFGAE AHEIVGLRKE RAEGKFVPDP RFLEVKEFVR SGVFGTYNYD 840 ELMGSLEGNE GYGRADYFLV GKDFPSYIEC QEKVDEAYRD QKLWTKMSIL NTAGSSKFSS 900 DRTIHEYAKD IWGISPVTLR * |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00343 | Phosphorylase | 3.0e-135 | 97 | 401 | 306 | + Carbohydrate phosphorylase. The members of this family catalyze the formation of glucose 1-phosphate from one of the following polyglucoses; glycogen, starch, glucan or maltodextrin. | ||
| cd04300 | GT1_Glycogen_Phosphorylase | 0 | 517 | 914 | 407 | + This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. | ||
| cd04300 | GT1_Glycogen_Phosphorylase | 0 | 29 | 401 | 376 | + This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. | ||
| pfam00343 | Phosphorylase | 0 | 518 | 916 | 404 | + Carbohydrate phosphorylase. The members of this family catalyze the formation of glucose 1-phosphate from one of the following polyglucoses; glycogen, starch, glucan or maltodextrin. | ||
| TIGR02093 | P_ylase | 0 | 518 | 914 | 402 | + glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0004645 | phosphorylase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK15695.1 | 0 | 1 | 919 | 19 | 927 | AF327055_1 alpha 1,4-glucan phosphorylase L isozyme [Oryza sativa] |
| GenBank | ACC59201.1 | 0 | 1 | 919 | 65 | 970 | plastid alpha-1,4-glucan phosphorylase [Triticum aestivum] |
| DDBJ | BAG49328.1 | 0 | 1 | 919 | 69 | 977 | plastidial starch phosphorylase 1 [Oryza sativa Japonica Group] |
| GenBank | EEC76210.1 | 0 | 1 | 919 | 69 | 963 | hypothetical protein OsI_13605 [Oryza sativa Indica Group] |
| GenBank | EEE59962.1 | 0 | 1 | 919 | 82 | 976 | hypothetical protein OsJ_12655 [Oryza sativa Japonica Group] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1qm5_B | 0 | 520 | 912 | 404 | 792 | A Chain A, Phosphorylase Recognition And Phosphorylysis Of Its Oligosaccharide Substrate: Answers To A Long Outstanding Question |
| PDB | 1qm5_B | 0 | 64 | 390 | 57 | 375 | A Chain A, Phosphorylase Recognition And Phosphorylysis Of Its Oligosaccharide Substrate: Answers To A Long Outstanding Question |
| PDB | 1qm5_A | 0 | 520 | 912 | 404 | 792 | A Chain A, Phosphorylase Recognition And Phosphorylysis Of Its Oligosaccharide Substrate: Answers To A Long Outstanding Question |
| PDB | 1qm5_A | 0 | 64 | 390 | 57 | 375 | A Chain A, Phosphorylase Recognition And Phosphorylysis Of Its Oligosaccharide Substrate: Answers To A Long Outstanding Question |
| PDB | 1e4o_B | 0 | 520 | 912 | 404 | 792 | A Chain A, Phosphorylase Recognition And Phosphorylysis Of Its Oligosaccharide Substrate: Answers To A Long Outstanding Question |
| Metabolic Pathways | |||
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| Pathway Name | Reaction | EC | Protein Name |
| starch degradation I | RXN-1826 | EC-2.4.1.1 | phosphorylase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO797178 | 399 | 521 | 919 | 0 |
| HO778303 | 399 | 521 | 919 | 0 |
| HO778303 | 396 | 37 | 432 | 0 |
| HO620767 | 401 | 519 | 919 | 0 |
| HO613954 | 401 | 519 | 919 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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