Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00005092m |
Family | GH28 |
Protein Properties | Length: 405 Molecular Weight: 41808.6 Isoelectric Point: 8.9976 |
Chromosome | Chromosome/Scaffold: 018206 Start: 7459 End: 9226 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 55 | 392 | 0 |
ADACLSTRPATVLVPPGRYLVSSATFAGPCRSRAAVTFAVAGTVVAPAGAGGRGSSGRWITFENVDGLVVSGGTLDGRGRALWECRRRGQSSCPTPASSL TIANSRDVVVAGVRSVDSELFHLVVLQCHGVTVRGVTVEAPADSPNTDGIHLHMSSHVSVYDARISTGDDCISIGPGNSNLWIERVACGPGHGISIGSLG KQEGMAVEAVQNVTVKTTWFTGTTNGLRIKTWGGSKRGFVRGVTFADATMSGVDNPIIIDQRYCPTTGGAGCPGGSSSISISDVRYVGVRGSSATPVAVS FDCSRSNPCSGIRLQDVALTYRGRPAAARSYCRNARGS |
Full Sequence |
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Protein Sequence Length: 405 Download |
MAMAKKLLGL LAHLHATVLF LPVDPAAGAM YNVLRYGARP DGAADAAGPF LRAWADACLS 60 TRPATVLVPP GRYLVSSATF AGPCRSRAAV TFAVAGTVVA PAGAGGRGSS GRWITFENVD 120 GLVVSGGTLD GRGRALWECR RRGQSSCPTP ASSLTIANSR DVVVAGVRSV DSELFHLVVL 180 QCHGVTVRGV TVEAPADSPN TDGIHLHMSS HVSVYDARIS TGDDCISIGP GNSNLWIERV 240 ACGPGHGISI GSLGKQEGMA VEAVQNVTVK TTWFTGTTNG LRIKTWGGSK RGFVRGVTFA 300 DATMSGVDNP IIIDQRYCPT TGGAGCPGGS SSISISDVRY VGVRGSSATP VAVSFDCSRS 360 NPCSGIRLQD VALTYRGRPA AARSYCRNAR GSTLGLVMPP SCLC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 5.0e-63 | 50 | 399 | 357 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-73 | 50 | 403 | 359 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-73 | 58 | 389 | 333 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 9.0e-88 | 23 | 402 | 385 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 3.0e-93 | 20 | 403 | 385 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACR36955.1 | 0 | 119 | 403 | 1 | 285 | unknown [Zea mays] |
GenBank | EAZ14447.1 | 0 | 3 | 403 | 1 | 408 | hypothetical protein OsJ_04368 [Oryza sativa Japonica Group] |
RefSeq | NP_001045053.1 | 0 | 3 | 403 | 1 | 408 | Os01g0891100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001141204.1 | 0 | 1 | 403 | 1 | 401 | hypothetical protein LOC100273291 [Zea mays] |
RefSeq | XP_002456767.1 | 0 | 1 | 403 | 1 | 403 | hypothetical protein SORBIDRAFT_03g042350 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 8e-19 | 127 | 338 | 117 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1hg8_A | 0.000000000000005 | 125 | 383 | 77 | 341 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1nhc_F | 0.00000000000001 | 123 | 346 | 74 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.00000000000001 | 123 | 346 | 74 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.00000000000001 | 123 | 346 | 74 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |